Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60877g00004 ATGGCTTCTCTGCTTGTTATGCTCCTTCCTCCTAACCTTATTCTTCTGTACTTAATGATCCTCTTGATAATGATTCAGATTCCTCCATACTTAAGCTCCAATGATGATAATAACTATACAAGTTGTGCTAATACTACCTATGATTGTGGGGTGATTAACAACATTGGTTTTCCATTCTGGGGAGGAAATCGTCCAAAGTGGTGTGGCCACCCTCTTCTACAACTCAACTGTGATCATCATGGCTTAGCTACTTACTTAACCATCAAGGGTATGAGATACCAGGTTCTGGAAGCGGACATGGAAAATCGAACCATGAAGATAGCAAGAGTGGACTACTTTGAAGGTCTATGCCCTTCAAAACCAGTGAACACAACCCTTGACTTTGATCTCTTTGAATATGGCCCTGGGAATAAGAATCTTACCCTCTTCTATCATTGTTCTTTCAATAATGGTTTCTCCAATTTTCTTAATTGTTTCTCAAATGGGACTTCCAGTGAACACTTTTATGCTCAGCCTCAGGATCTAGGTGCTCCTCCTTCTGCTTTGATTTGCTCAACAGAGGTGTTTGTTCCAATATTCTTGCTGCAATTTGATGAAGGGGACTTGTCATGGAACAAAATAGAAGGTGCTATCCAAAATGGATTCATGGTGAGATGGATAGAAGGTGTAGAAGAATGTGTGAAGTGTATGAACTCAGGTGGAGCCTGTGGCTATGATTGGAATTCAAATCAATCAACATGTTATTGCAAAGATCAGTTTAATTCTTCATATTTGGGTGATAGAATCATCAAAACTTGTGATCCTTCTGCTTTGGCACCACCTCATCAAGATGATCATGGACCTTCATCAGATAAAAGTAGTTCTAGCAAAGCGCCTGCTATAGGAGCTTCTGTAGGAGCTGTAGTCCTTGTTGTCCTTCTTGTAGGCACATTTTTTGTGGTGAGAAAAAGGAGAAGAAATGCTGAAAGATCAAGAAGCAACAAGGATACTTTGCCTTTGAGTGGAGTCCCTCTTACATCTTCAACTACAAGTAGTAGTAACACATCTCAGAGTGCTTCTTCTTACCCTTCCTCCAAGTCTGAGTCTGTTGTTGGGCCAAAGAGTTACTACTATGGTGTTCATGTGTTTGACTATGCTGAACTTGAGGAAGCTACCAAGAATTTTGACCCTTCTAGAGAAATTGGTGAGGGAGGCTTTGGCACTGTTTACAAAGGTATACTTCAAGATGGGCGTGTAGTTGCAGTGAAGCGTCACTATGAAAGCCATTTAAAGCGTGTTGAGCAATACATGAATGAAGTTGAGATTCTGGCACATTTGAGGCACAAGAATTTGGTCTCTCTCTTTGGCTGCACTTCAAGACACAGCAGAGAACTCATCCTTGTTTATGAGTTCATACCGAATGGAACACTGGCCGATCACCTCCATGGAAGCCTTGCAAATTCCACCTTACTTCCTTGGAATGTAAGATACAACATTGCACTCGAAACAGCTGAGGCGCTGTCCTACCTCCATTCTAAGAAAGTCATACACAGAGATGTTAAGTCCAACAACATTCTGCTGACAGAGAATTTTCAAGTTAAGGTTGCTGATTTTGGACTATCAAGGTTGTTTCCTAAGTTTGTTACTCATGTCTCAACAGCGCCGCAAGGAACACCTGGCTATGTTGATCCAGAGTATTACCAGAACTATCAATTAACCGATAAGAGTGATGTTTATAGCTTTGGAGTGGTGTTGGTTGAGCTTATATCTTCATTGCAAGCAGTGGACATAACCCGGCAGAGGAACGAAGTTAACTTGGCTAGTCTTGCAGTGAATAGGATACAGAGCCAAGAACTGCATGACATGGTTGATCCAGATCTTGGATTTGAGAGGGACAATGAGGTAAGGAGGATGGTAACTGCAGTGGCTGAATTGGCATTTAGGTGCTTGCAGCAGCAGAGAGAGATGAGGCCCTCCATGGATGAGGTTCTTGAGGTCTTAAGAGGGGTAAAGAGCGACGAGTTTGATGCAATAGAGAAAAACTCATCACAATCAGTAGTGGATTTTAATCATAGTAAGACAGAGGAGGCCATACTTTTGAAGAAGGTTCCATCACCATTTTCACCAGATTCTGTTGCTGATAAATGGCAGTGGGACATGCTAAGAAGAACGGCTTAA 2157 0.4182 MASLLVMLLPPNLILLYLMILLIMIQIPPYLSSNDDNNYTSCANTTYDCGVINNIGFPFWGGNRPKWCGHPLLQLNCDHHGLATYLTIKGMRYQVLEADMENRTMKIARVDYFEGLCPSKPVNTTLDFDLFEYGPGNKNLTLFYHCSFNNGFSNFLNCFSNGTSSEHFYAQPQDLGAPPSALICSTEVFVPIFLLQFDEGDLSWNKIEGAIQNGFMVRWIEGVEECVKCMNSGGACGYDWNSNQSTCYCKDQFNSSYLGDRIIKTCDPSALAPPHQDDHGPSSDKSSSSKAPAIGASVGAVVLVVLLVGTFFVVRKRRRNAERSRSNKDTLPLSGVPLTSSTTSSSNTSQSASSYPSSKSESVVGPKSYYYGVHVFDYAELEEATKNFDPSREIGEGGFGTVYKGILQDGRVVAVKRHYESHLKRVEQYMNEVEILAHLRHKNLVSLFGCTSRHSRELILVYEFIPNGTLADHLHGSLANSTLLPWNVRYNIALETAEALSYLHSKKVIHRDVKSNNILLTENFQVKVADFGLSRLFPKFVTHVSTAPQGTPGYVDPEYYQNYQLTDKSDVYSFGVVLVELISSLQAVDITRQRNEVNLASLAVNRIQSQELHDMVDPDLGFERDNEVRRMVTAVAELAFRCLQQQREMRPSMDEVLEVLRGVKSDEFDAIEKNSSQSVVDFNHSKTEEAILLKKVPSPFSPDSVADKWQWDMLRRTA 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60877g00004 718 ProSitePatterns Protein kinases ATP-binding region signature. 394 416 IPR017441 GO:0005524
Stsc60877g00004 718 Pfam Protein kinase domain 391 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60877g00004 718 SUPERFAMILY Protein kinase-like (PK-like) 368 667 IPR011009 -
Stsc60877g00004 718 MobiDBLite consensus disorder prediction 327 364 - -
Stsc60877g00004 718 Gene3D Phosphorylase Kinase; domain 1 361 464 - -
Stsc60877g00004 718 MobiDBLite consensus disorder prediction 322 364 - -
Stsc60877g00004 718 FunFam Wall-associated receptor kinase-like 20 465 674 - -
Stsc60877g00004 718 SMART serkin_6 388 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60877g00004 718 CDD STKc_IRAK 394 660 - -
Stsc60877g00004 718 Pfam Wall-associated receptor kinase C-terminal 180 252 IPR032872 -
Stsc60877g00004 718 Gene3D Transferase(Phosphotransferase) domain 1 465 688 - -
Stsc60877g00004 718 ProSiteProfiles Protein kinase domain profile. 388 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60877g00004 718 FunFam receptor-like protein kinase FERONIA 347 464 - -
Stsc60877g00004 718 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 710 IPR044652 GO:0004672
Stsc60877g00004 718 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Stsc60877g00004 718 MobiDBLite consensus disorder prediction 269 291 - -
Stsc60877g00004 718 Pfam Wall-associated receptor kinase galacturonan-binding 42 109 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60877g00004 Stsc-Chr60877 11250 20078 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60877g00004 40 709 Receptor kinase-like Gene Family AT1G25390 39.912 1.31e-139 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc60877g00004 Pkinase 1.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60877g00004 - - aip:107635700 1081.24