Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60872g00002 GACTGTGCCCCCAATACACACAAACACAAAAGCGTCCAAGGTTCTTCAAGGCATTCTAGTCTCCTTGCTGTCCTGAGTGGTGGTAAATCATGTGAGGATAAGCAAAAGGAGAAGCAAGAAGAAGCTTCTGTTTCTGAGAATCAATCACAATACCCCTTTCCGGAGCTTTCTTCCTCCAGTAGGCTTGAGGTGACGGTACTAACTAAACCTACTGCGGCTGAACTCAGTCGAGTACTTGAGCAATTGCAGCCAGATTTTGTTTACCTGCAAGGTAGACAGCTAGAAGATAGTGGAGAAATCGGATCTCTTATATGGGAAGATTTTGACCTGTCTAGTCCAGAAGCCTTGTGTCAATTATTTTCTTCAAAATTACCTAATACTGTTTATTTAGAAACTCCTAAGGGAGAAAAGTTGGCAGAGGCACTCCATTCTAAGGGAATTCCGTACACCATATATTGGAAAAATGACTTTTCAAAGTACGCAGCTTCACATTTTCATCAAGCTTTGTTCTCAGTGTCACAGAGTACATCCAGTCACACATGGGATGCTTTCCAGCTTGCTCTGGCAACTTTCAGACTATACTGTGTGCGAAACAGCGTCTTTCCTCCTAACAATAAGGGTGGTGGTAAGCTTGGGCCACAAATTCTTGGCGACCCTCCCAATATTGATGTTGGTCCAAGTGAAGCAGACATAGAACAGGAGGAGACTGAACCTGAGAGCATTTCTGCTATTACGATATATGATAATGCAGTGAACATGAGGTTTCTTGTTTGTGGAGTTAGTTGCACTTTGGATGCTTGTTTATTGGGGTCATTAGAGGATGGACTCAATGCTCTCCTATGTACAGAAATACGTGGGTGTAAACTTTACAACCGAACAAGTGCTCCACCGCCACCTCTCCAGGCAGCAGCATTCTCACGTGGTGTGGTGACCATGCGTTGTGATATATCCACATGTAGTTCTGCTCATATATCACTTTTGGTGTCTGGTAGTGCAGACACTTGTTTTAATGATCAGCTTTTGGAGATTCATATTAAAAAAGAGCTCACTGAGAAGAGTCAGCTTGTTCAAGCAGTTCCTAATCATGTACAAAGGAAATTGTCTTACTCTGAGCCTCGAAGATCATCCTCAGTAGCCTGTGGATCAAGTGTCTTTGAAGTTTGCTTGCGTGTTCCTGCATGGGCTTCACAGATTCTGAGACAGCTGGCACCTAATGTATCATACCGTAGCCTAGTTATTTTGGGAGTTGCTAGCATTCAAGGATTGCCAGTTGCATCTTTTCATAAAGATGATGCTGAACGTCTCCTTTTCCTTTGTACTAGGCAGGGGAAAGAAAGCTCTACTAACGATCCTGTTTTCTCTGGGCATCCTACTTGGCTGATGCCTCCGGTACCTAGTCGAAAAAGATTTGTATCATGCTCTAGAAAAAAGTCTGAGGATTTTCGTAGTGATAGACATAAATTAGATTTTGCTGCAATGAGACCAATCCCTCATTCTAATCATCATAAGGTTCTCCCGTTTTCGGGATCCTCTGAGGGTGAAAAGTACGATGGAGAACATGGAAAGTCAAATCCGTTACTTGCTCCTATTAAGCATAATGTTGCAGGCATAAATTCTGTACCAAATAGGAAATCTGCATCGAAGACATTTCAAGCTCATCCGATTATTTATTTGAATCCGCTACCTATGAAAAAACATCATTGTGATAGAGCTCCGATACGAGTTTGCTCAGAGGAGGAATTCCTGACTGATGTAATGCAGTTTCTGATCCATCGAGGGCATAATCGCCTAATCCCTCCTGGCGGGCTAGCTGAGTTTCCCGACGCCATTCTCAATGCCAAACGCCTTGATCTTTTCAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGGAATGGTATCAACTGGAAAGGGCAAGTTTTCTCAAAGATGAGAAATCACACTTTGACAAATAGAATGACGGGTGTTGGCAATACATTGAAAAGACATTATGAGACTTATCTTTTAGAATATGAATTATCTCACGACGACGTGGATGGGGGGGAGTGTTGCTTGTTGTGTCACAGTAGTGCAGCCGGCGACTGGGTGAACTGTGGTATATGTGGTGAGTGGGCTCACTTTGGATGCGATAGGCGGCAGGGACTTGGGGCGTTTAAGGACTATGCTAAAACGGATGGGCTGGAGTACGTTTGTCCCCACTGCAGCATTTCAACTTACAGTAAAAAATCCCAGAAAACTGCAAATTGA 2256 0.4335 DCAPNTHKHKSVQGSSRHSSLLAVLSGGKSCEDKQKEKQEEASVSENQSQYPFPELSSSSRLEVTVLTKPTAAELSRVLEQLQPDFVYLQGRQLEDSGEIGSLIWEDFDLSSPEALCQLFSSKLPNTVYLETPKGEKLAEALHSKGIPYTIYWKNDFSKYAASHFHQALFSVSQSTSSHTWDAFQLALATFRLYCVRNSVFPPNNKGGGKLGPQILGDPPNIDVGPSEADIEQEETEPESISAITIYDNAVNMRFLVCGVSCTLDACLLGSLEDGLNALLCTEIRGCKLYNRTSAPPPPLQAAAFSRGVVTMRCDISTCSSAHISLLVSGSADTCFNDQLLEIHIKKELTEKSQLVQAVPNHVQRKLSYSEPRRSSSVACGSSVFEVCLRVPAWASQILRQLAPNVSYRSLVILGVASIQGLPVASFHKDDAERLLFLCTRQGKESSTNDPVFSGHPTWLMPPVPSRKRFVSCSRKKSEDFRSDRHKLDFAAMRPIPHSNHHKVLPFSGSSEGEKYDGEHGKSNPLLAPIKHNVAGINSVPNRKSASKTFQAHPIIYLNPLPMKKHHCDRAPIRVCSEEEFLTDVMQFLIHRGHNRLIPPGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELSHDDVDGGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISTYSKKSQKTAN 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60872g00002 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 679 743 IPR013083 -
Stsc60872g00002 751 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 14 751 IPR042293 -
Stsc60872g00002 751 SUPERFAMILY ARID-like 576 684 IPR036431 GO:0003677
Stsc60872g00002 751 MobiDBLite consensus disorder prediction 1 20 - -
Stsc60872g00002 751 SUPERFAMILY FYVE/PHD zinc finger 661 739 IPR011011 -
Stsc60872g00002 751 Pfam ARID/BRIGHT DNA binding domain 578 675 IPR001606 GO:0003677
Stsc60872g00002 751 ProSiteProfiles ARID domain profile. 575 679 IPR001606 GO:0003677
Stsc60872g00002 751 CDD ARID 577 675 - -
Stsc60872g00002 751 Gene3D - 576 678 IPR036431 GO:0003677
Stsc60872g00002 751 MobiDBLite consensus disorder prediction 27 56 - -
Stsc60872g00002 751 CDD PHD_ARID4_like 686 737 - -
Stsc60872g00002 751 SMART ARID_2 572 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60872g00002 Stsc-Chr60872 15398 22494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60872g00002 13 751 ARID Transcription Factor Family AT3G43240 63.306 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc60872g00002 ARID 8.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60872g00002 - - gmx:100808357 1200.65