Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60872g00001 ATGAGCCTCCAGCCCCCTCTGAATCCCCAAACAGGGACACCATCACCATCAAACACTCCTCCTTCAATTCCCCCGTCAAACGACGATGTAATCGACGTTGACACTTTCGTCTTCACCCCACTCTCTCAAAAGGGCACACACAAAACCACACCCATCTCCGTCGAACACTACGACCAAGACAGGGACCTCCAACTCGCAATCGCCGCCTCCCTCTCCCTCCCACTCCCTCACCACCTCATCAACCTCTCAGACGACGACAGCGACGATGACGTCAGCATCCTCGCTGCAAAACCCGAAAACACCCCTTTCGGGAGACGAAAAAAGACGAAAGAGAAAGGCGAGTCGTCCTCCATCATCGCCTCGCCGTTCCTCTGCGAAATCTGCACCGAAACGAAGCCATTAGAGGAATCTTTCGGCGTCACCGGTTGCAACCACTCCTACTGCAACGACTGTGTGGTGCTGTACATTGGATCGAAGCTTCAGGAGAACGTGATCAACATTCGGTGTCCGGTGCCGGGATGCAAGGGGCTTTTGGAGCTGGAAGGTTGCCGTGAGATTCTTCCGAAGGAGGTTTTCGATCGGTGGGGGATGGCAATGTGTGAGGCTGTGGTTGTTGAAGGTGAGAGATTCTATTGCCCTTTCAAGGACTGCTCGGCGCTTTTGATCGACGACGGCGGAGAGGTGGTGAGGGATTCGGAGTGCCCTAAATGTAGGAGGATGTTCTGTGCACAGTGCAAGGTGGCTTGGCATGATGGGATTGAGTGCAGTGAGTTTCAGATGCTGAATAAGGATGAGAGGGAGAAGGAGGATATCATGCTCATGAATTTGGCCAAAACCAAGAAGTGGAGGAGGTGCCCCAAGTGCAAGTACTATGTTGAAAAATCTGAGGGCTGCATGTACATGAAATGCAGGTGTGGACATGCCTTCTGTTACCACTGTGGAGCTCGTGGCAATAACAATACCCACCTTTGCAGCTCCTGCAACCGTTAA 990 0.5273 MSLQPPLNPQTGTPSPSNTPPSIPPSNDDVIDVDTFVFTPLSQKGTHKTTPISVEHYDQDRDLQLAIAASLSLPLPHHLINLSDDDSDDDVSILAAKPENTPFGRRKKTKEKGESSSIIASPFLCEICTETKPLEESFGVTGCNHSYCNDCVVLYIGSKLQENVINIRCPVPGCKGLLELEGCREILPKEVFDRWGMAMCEAVVVEGERFYCPFKDCSALLIDDGGEVVRDSECPKCRRMFCAQCKVAWHDGIECSEFQMLNKDEREKEDIMLMNLAKTKKWRRCPKCKYYVEKSEGCMYMKCRCGHAFCYHCGARGNNNTHLCSSCNR 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60872g00001 329 ProSiteProfiles TRIAD supradomain profile. 121 329 IPR044066 -
Stsc60872g00001 329 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 85 327 IPR031127 GO:0004842|GO:0016567
Stsc60872g00001 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 205 IPR013083 -
Stsc60872g00001 329 SMART ibrneu5 193 255 IPR002867 GO:0008270
Stsc60872g00001 329 SMART ibrneu5 265 327 IPR002867 GO:0008270
Stsc60872g00001 329 CDD BRcat_RBR_unk 206 258 - -
Stsc60872g00001 329 SUPERFAMILY RING/U-box 266 328 - -
Stsc60872g00001 329 SUPERFAMILY RING/U-box 122 202 - -
Stsc60872g00001 329 MobiDBLite consensus disorder prediction 1 29 - -
Stsc60872g00001 329 Pfam IBR domain, a half RING-finger domain 206 255 IPR002867 GO:0008270
Stsc60872g00001 329 Pfam IBR domain, a half RING-finger domain 276 317 IPR002867 GO:0008270
Stsc60872g00001 329 CDD Rcat_RBR_unk 281 316 - -
Stsc60872g00001 329 SUPERFAMILY RING/U-box 198 259 - -
Stsc60872g00001 329 Gene3D - 252 329 - -
Stsc60872g00001 329 ProSiteProfiles Zinc finger RING-type profile. 125 171 IPR001841 -
Stsc60872g00001 329 FunFam RBR-type E3 ubiquitin transferase 120 206 - -
Stsc60872g00001 329 SMART ring_2 125 172 IPR001841 -
Stsc60872g00001 329 SMART ring_2 285 327 IPR001841 -
Stsc60872g00001 329 MobiDBLite consensus disorder prediction 1 23 - -
Stsc60872g00001 329 ProSitePatterns Zinc finger RING-type signature. 143 152 IPR017907 -
Stsc60872g00001 329 FunFam RBR-type E3 ubiquitin transferase 257 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60872g00001 Stsc-Chr60872 13287 15244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60872g00001 125 315 C3H Transcription Factor Family AT2G19610 30.846 2.79e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60872g00001 K11975 - qsa:O6P43_021976 395.586