Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60870g00006 ATGTTTCCACTGATAATGGCTAAAACACTGCCAGTAGTAGCAGTAGCAGGGGAGGATGGTGAAGAAATGGGTAACAGAATAGAGACAGAGGAGGAGGAGAAGGAAAAGGAAGACGAAGGAGAACAAGAAGAAGAAAAAAAGGAGGAGGAGGTGGAAGTGGTGCACGAGGAGAGGAGGAGAAAACAAAAGATAACGATAAAGTTGGTGTATGGCGAAGGATCAAGAAGATGGGATTCGTCCTCAAACTGTAACTCTTTGTTTTGCTGTTGTCAGGCAGATGAATGTCTTGCGAACTTACAGGCAGCCAAGAGGTACAATCGACGCCACAAGGTCTGTGAGCGACATGCTAAGGCTCCGGTAGTCTTAGTTTCCGGCACTCGTCAGAGGTTCTGCCAACAGTGTAGCAAATTCCATGAGCTAGCACTATTTGATGACAACAAAAGGAGCTGTAGAGAAAGATTGGCCAGTCACAATGAGCGCAGAAGAAAGGCTCAAGCTCAGCATGCAGACATCCAACAACACCCACAGGGCGATCTTAATTAA 543 0.4641 MFPLIMAKTLPVVAVAGEDGEEMGNRIETEEEEKEKEDEGEQEEEKKEEEVEVVHEERRRKQKITIKLVYGEGSRRWDSSSNCNSLFCCCQADECLANLQAAKRYNRRHKVCERHAKAPVVLVSGTRQRFCQQCSKFHELALFDDNKRSCRERLASHNERRRKAQAQHADIQQHPQGDLN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60870g00006 180 SUPERFAMILY SBT domain 88 168 IPR036893 GO:0003677|GO:0005634
Stsc60870g00006 180 MobiDBLite consensus disorder prediction 32 47 - -
Stsc60870g00006 180 MobiDBLite consensus disorder prediction 16 52 - -
Stsc60870g00006 180 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 58 172 IPR044817 GO:0003677
Stsc60870g00006 180 Coils Coil 26 52 - -
Stsc60870g00006 180 Gene3D - 86 151 IPR036893 GO:0003677|GO:0005634
Stsc60870g00006 180 ProSiteProfiles Zinc finger SBP-type profile. 87 164 IPR004333 GO:0003677
Stsc60870g00006 180 Coils Coil 147 174 - -
Stsc60870g00006 180 MobiDBLite consensus disorder prediction 156 180 - -
Stsc60870g00006 180 Pfam SBP domain 90 163 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60870g00006 Stsc-Chr60870 19140 20272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60870g00006 90 163 SBP-box Gene Family AT3G15270 68.919 4.13e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc60870g00006 SBP 2.6e-30 No_clan