Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60869g00010 ATGATGCCTCCAAGATTATTACTCCAAGAGAATAATCCTCCATCCTCTATGGGATCTAAGAAGAAATCACCATCCCTTCACGGTTCAGGAGCATTGTTTTTCTTCCTTGGAGGAACAATAGTGCTTATCATACTCCTCCTTCTTCTCTTCTTCTATTATTGGATGCGTATTAAAAAACGGTCACCACAAGAGGCAGAGAAAAAAATCCAAAAGGAACCTTCAATAATGACTCAACACCAAGATGAAGTGGTGAAGGCAACATTTTCAAGTAAACAACTGCAAGGATCAACGAACTTCTTTAGTGGGAACCTTCGGACAATTAGCCACTTTGACTTCTACACATTGAGGAGGGCAACAAGGAATTTCCATCCCAAAAATCTTCTTGGAAGTGGTGGTTTTGGACCTGTTTATCAGGGAAAGTTAGAAGATGGAAGGCTAATTGCTGTTAAGCAATTATCTGCTGAGAAATCCCAACAAGGAGAAAAAGAGTTCTTGGCAGAGGTGAGATTAATCACAAGCATCCAGCACAAGAATCTTGTTCGCCTTCTTGGTTGTTGCACTGATGGTTCTCAAAGGATACTTGTCTATGAATACATGAAGAACAGAAGTTTGGACCGCATCCTATATGGAAAAAGTGAGCAATTCCTGGATTGGAGCACAAGATTCCAAATTATTCTAGGAGTGGCAAGGGGATTGCAGTATCTACATGAGGATTCACATTTCAGAATTGTTCATAGGGATATCAAAGCAAGCAACATTCTCCTTGATGAAAAGTTTCAGCCAAAGATTGGAGACTTTGGGCTAGCTCGATTCTTTCCTGAAGATCAAGCTTACCTAAGCACTCAATTTGCTGGAACATTAGGTTATACAGCTCCAGAATATGCTATTAGAGGAGAACTATCAGAAAAGGCTGATATCTATAGTTTTGGAGTTCTTGTTCTTGAAATCATTAGTTGCAGGAGAAATACAGATCTTACTTTACCATCAGAAATGCAATACCTCCCTGAATATGCATGGAAGCTTAATGAGAAGTCAATGGTGATGGAGCTTGTGGATGGAAGGCTAAGAGAAGATGGATTGGTGGAGAAGGATGTGATGAGAGCATTCCACGTGGCATTGTTGTGCATACAGCCTCATGCAAGTCAGAGACCAGCCATGTCAGAGATAGTGGCACTGTTGACTTTCAAGGCTGAGATGGTGTCAACACCAATGAGGCCTTCATTCTTTGATCGGAGACGGAAGAAGCATGATGAGGACATCACCTCTTGGGAAGCCATATCAGACACTTTCTCAGCTCCAATCATCAGTGATTCTAATTTTCCAACATCTCAAGATCGCTGA 1341 0.4124 MMPPRLLLQENNPPSSMGSKKKSPSLHGSGALFFFLGGTIVLIILLLLLFFYYWMRIKKRSPQEAEKKIQKEPSIMTQHQDEVVKATFSSKQLQGSTNFFSGNLRTISHFDFYTLRRATRNFHPKNLLGSGGFGPVYQGKLEDGRLIAVKQLSAEKSQQGEKEFLAEVRLITSIQHKNLVRLLGCCTDGSQRILVYEYMKNRSLDRILYGKSEQFLDWSTRFQIILGVARGLQYLHEDSHFRIVHRDIKASNILLDEKFQPKIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIISCRRNTDLTLPSEMQYLPEYAWKLNEKSMVMELVDGRLREDGLVEKDVMRAFHVALLCIQPHASQRPAMSEIVALLTFKAEMVSTPMRPSFFDRRRKKHDEDITSWEAISDTFSAPIISDSNFPTSQDR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60869g00010 446 SMART serkin_6 122 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60869g00010 446 Pfam Protein tyrosine and serine/threonine kinase 125 392 IPR001245 GO:0004672|GO:0006468
Stsc60869g00010 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Stsc60869g00010 446 FunFam Cysteine-rich receptor-like protein kinase 10 86 198 - -
Stsc60869g00010 446 ProSiteProfiles Protein kinase domain profile. 122 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60869g00010 446 SUPERFAMILY Protein kinase-like (PK-like) 104 396 IPR011009 -
Stsc60869g00010 446 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 13 421 - -
Stsc60869g00010 446 Gene3D Transferase(Phosphotransferase) domain 1 199 404 - -
Stsc60869g00010 446 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 199 403 - -
Stsc60869g00010 446 MobiDBLite consensus disorder prediction 1 22 - -
Stsc60869g00010 446 CDD STKc_IRAK 128 394 - -
Stsc60869g00010 446 Gene3D Phosphorylase Kinase; domain 1 83 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60869g00010 Stsc-Chr60869 32709 35338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60869g00010 110 443 Receptor kinase-like Gene Family AT1G56120 48.204 4.87e-103 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60869g00010 PK_Tyr_Ser-Thr 8.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60869g00010 - - ccaj:109792436 606.675