Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60869g00001 ATGCCTTCCAAGATGAGGATGATGCGCAAGATGATGGTTTCCTCCGATCATCATCAACTACAAGAACAAGAACAAGAGATTCCTGTTATTATTGCAAGTAGTGACCACGACAATCACAATCAGAGTAATACTGCTACTACTGTTAGGGTTTGCTCTGATTGTCACACCACTAAGACCCCTCTCTGGAGAAGTGGACCTAGAGGCCCCAAGTCACTTTGCAATGCATGTGGTATACGACAAAGAAAGGCGAGGCGCGCCGCCATGGCTGCCGCTGCGGCAAATGGTACCACACTCGCGGCGGCTGAGGCGTCTGGGAAGGTACACAAATTTGGTAGAAGCAAAGAGAAGCTGAAGCCCAAAAGTGGTGGCGGTGGTGATTATCAGTTGATGAAAAAGAAGCGCAATAATAATAATAATAATAACAAGGTTATTGGAGGTGGTGGGAGATCAGGGAAGCAATCTCATCATCAACATAATTATTGTTTTGAAGATTTGAGATTAAGCTTATTAAGCAAGAATTTGGCTGTTCATCAAGTATTCCCTCAGGATGAGAAAGAGGCTGCCATCCTTCTCATGGCCTTATCCTATGGTCTTGTTCTTGGATGA 606 0.4472 MPSKMRMMRKMMVSSDHHQLQEQEQEIPVIIASSDHDNHNQSNTATTVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAMAAAAANGTTLAAAEASGKVHKFGRSKEKLKPKSGGGGDYQLMKKKRNNNNNNNKVIGGGGRSGKQSHHQHNYCFEDLRLSLLSKNLAVHQVFPQDEKEAAILLMALSYGLVLG 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60869g00001 201 MobiDBLite consensus disorder prediction 110 155 - -
Stsc60869g00001 201 Pfam GATA zinc finger 51 84 IPR000679 GO:0006355|GO:0043565
Stsc60869g00001 201 CDD ZnF_GATA 50 82 IPR000679 GO:0006355|GO:0043565
Stsc60869g00001 201 Gene3D - 41 104 IPR013088 GO:0006355|GO:0008270
Stsc60869g00001 201 SMART GATA_3 45 97 IPR000679 GO:0006355|GO:0043565
Stsc60869g00001 201 MobiDBLite consensus disorder prediction 131 155 - -
Stsc60869g00001 201 ProSiteProfiles GATA-type zinc finger domain profile. 45 81 IPR000679 GO:0006355|GO:0043565
Stsc60869g00001 201 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 46 85 - -
Stsc60869g00001 201 ProSitePatterns GATA-type zinc finger domain. 51 76 IPR000679 GO:0006355|GO:0043565
Stsc60869g00001 201 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 199 - -
Stsc60869g00001 201 FunFam GATA transcription factor 21 45 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60869g00001 Stsc-Chr60869 4489 5298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60869g00001 42 201 C2C2-Gata Transcription Factor Family AT5G56860 48.588 2.33e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc60869g00001 GATA 1.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60869g00001 - - aip:107642994 225.328