Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60867g00002 ATGTGCAGCGGTTCCAAGAGGAAACCTACTCAAACTGGTTTGGTTATGGAAGATGATTATGGAAGACAAGAAGGTCAGCATCAAAAGATTTCTGCTTTGCTTGAACTTGCAGCTGCAGATGACCTAATTGGTTTCAAAGACGCAGTTGAGAAAGAGGGTTGGGATGTGGATGAGGCCGGGTTGTGGTTTGGAAGGAGGCTTGGCTCAAAGAAAGTGGGTTATGAAGAGAGAACACCACTTATGGTTGCTGCTATGTTTGGAAGCCTGAGAGTTTTGGCTTATATTCTCGGAACTGGCTGTGTTGATGTCAACAGGGCTAGTGGCTCAGATGGTGCTACTGCCATTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCCCTTGAGGTTGTCAAGCTTTTGCTTGAATCATCGGCAGATGTTAATGCTGTTGATTCAAATGGTAACCGGCCTGCTGATTTGGTTGTCTCGGGGGCTAACTCTATCCCCAGCTCAAGAAAGAGGATGCTGCAAGTCATGCTGGAAGGTACAGTTGGTGCTGACAAGACATTTGAGGATGTAGTTGGCCAAATCGAGGAACAACAAAGAGAAAATGCTGTGAACACGCCTCATGTTTTGAAAGATGGGGCCGATAAGAAGGATTATCCGGTTGATCACTCTCTTCCTGACATAAAGAACGGGATATATGGTACAGATGAGTTCAGGATGTATACATTCAAAGTGAAGCCTTGTTCGAGGGCTTATTCTCATGATTGGACCGAGTGTCCCTTTGTTCATCCAGGGGAAAACGCCAGACGACGTGATCCAAGGAGGTACCATTATAGCTGTGTGCCTTGTCCTGAATTCCGGAAGGGATCATGCAGCAAGGGAGATTTATGCGAGTATGCACATGGTATTTTCGAGTGCTGGCTTCATCCTGCCCAGTACCGGACCCGGCTTTGCAAGGACGAGGGTGCGTGTATGAGAAGAGTTTGCTTCTTTGCTCACAAGCCTGAGGAGCTTCGCCCCCTCTATGCTTCTACTGGTTCGGCTATGCCATCTCCCAGATCTTATTCGGGTGGTTCTCCTTTGGATATGGGTCCAGTTAGCCCAATCACACTTGGTTCTCCATCTGTAATGATACCACCTGTGTCAACACCGCCTTTGACTCCTTCCGGATCTTCCTCTCCTCTCTCCGGATCCATGTGGCAGAATCAATCTAACATCCCAACCCTGCAGCTTTCTAGAAGCAGATTGCAAACTGCATTAACTGCTAGAGATAATTCAGATACTGAATTGCTTATGCAGCTAATGATTGATGAAATGAATAGTCTTTCCTCCCCCAGTTGGAAAAATTCCTTGACTAATAATAATAATCCATCATATCATTTTTCTTTGGGTGATCGCGCTGCGGATCTAAATAGGCTTTCAGGAGTGAAGCCTACTAACCTTGACGACACTTTTGGGTCTGTTGACCCGTCAATTTTGTCCAAATTCAATGGAATTTCATTTGATGCTGCAGGACCTCAGTTACATTCTCCAACTGGATTGCAGATGCGCCAGAACATAAATCAGCAGCTGCGAGGCTATTCTTCTGGCTTGTCCTCTCCGANNNNNNNNNNATCAGGGGAAGCAGCTGCAATGGCTTTTAATCCAAGACTTGCTGCCTTTTCACAGCGGAGCCAGAGCTTTGTTGAGCGCAGCATGGCAAACCGTCATTCTGAGGTTCCTTCGCTGGCCACCTCTGTAGCAGCAAAGCCTTCTATGGCATATTCTCATTGGGGCGCTCATGATGGAAAATTGGATTGGCCGATGCAGGGCGAGGAGCTGAATAAGCTGAGGAAATCTGCTTCTTTTGGATTTCGAAGCGGCAGTATTCCTTCGCCGAGGGCTGCAACCAGAATGTCAGCTGCAAAAGTTGATGAACCGGATGTGTCTTGGGTTAACTCGCTTGTGAAGGATGCCCCAGCACAGCCAGAGTCCGGCTCGATTAGTGCTGAAGATCAGCAACAGCTGCAATGTCATCTCAACAATGGAACAGATGTGATTCCAGCTTGGTTGGAGCAAATGTACATTGATCAGGAGCAAATGGTTGCATGA 2076 0.4701 MCSGSKRKPTQTGLVMEDDYGRQEGQHQKISALLELAAADDLIGFKDAVEKEGWDVDEAGLWFGRRLGSKKVGYEERTPLMVAAMFGSLRVLAYILGTGCVDVNRASGSDGATAIHCAVAGGSAASLEVVKLLLESSADVNAVDSNGNRPADLVVSGANSIPSSRKRMLQVMLEGTVGADKTFEDVVGQIEEQQRENAVNTPHVLKDGADKKDYPVDHSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYHYSCVPCPEFRKGSCSKGDLCEYAHGIFECWLHPAQYRTRLCKDEGACMRRVCFFAHKPEELRPLYASTGSAMPSPRSYSGGSPLDMGPVSPITLGSPSVMIPPVSTPPLTPSGSSSPLSGSMWQNQSNIPTLQLSRSRLQTALTARDNSDTELLMQLMIDEMNSLSSPSWKNSLTNNNNPSYHFSLGDRAADLNRLSGVKPTNLDDTFGSVDPSILSKFNGISFDAAGPQLHSPTGLQMRQNINQQLRGYSSGLSSPXXXXSGEAAAMAFNPRLAAFSQRSQSFVERSMANRHSEVPSLATSVAAKPSMAYSHWGAHDGKLDWPMQGEELNKLRKSASFGFRSGSIPSPRAATRMSAAKVDEPDVSWVNSLVKDAPAQPESGSISAEDQQQLQCHLNNGTDVIPAWLEQMYIDQEQMVA 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60867g00002 691 SMART ANK_2a 75 105 IPR002110 GO:0005515
Stsc60867g00002 691 SMART ANK_2a 110 142 IPR002110 GO:0005515
Stsc60867g00002 691 MobiDBLite consensus disorder prediction 383 397 - -
Stsc60867g00002 691 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 297 IPR000571 GO:0046872
Stsc60867g00002 691 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Stsc60867g00002 691 Gene3D - 7 197 IPR036770 -
Stsc60867g00002 691 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Stsc60867g00002 691 SMART c3hfinal6 307 330 IPR000571 GO:0046872
Stsc60867g00002 691 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Stsc60867g00002 691 MobiDBLite consensus disorder prediction 338 397 - -
Stsc60867g00002 691 Pfam Ankyrin repeats (3 copies) 73 144 IPR002110 GO:0005515
Stsc60867g00002 691 FunFam Zinc finger CCCH domain-containing protein 66 230 298 - -
Stsc60867g00002 691 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872
Stsc60867g00002 691 PANTHER UNKEMPT FAMILY MEMBER 35 647 IPR045234 -
Stsc60867g00002 691 Gene3D - 272 335 - -
Stsc60867g00002 691 SUPERFAMILY Ankyrin repeat 50 159 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60867g00002 Stsc-Chr60867 34950 38211 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60867g00002 30 686 C2H2 Transcription Factor Family AT5G12850 38.364 1.15e-139 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc60867g00002 Ank_2 3.8e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60867g00002 - - aprc:113846970 931.013