Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60865g00004 ATGCGGTGGGGAGATCTAAACAATAGCACAAATGGCATGAAGGAGGTCTTAATTATCATGTTTGTCGAATGGATATTGGTGCTTTTCTTTGCTTATTACCTCGATCAAGTTTTTACTTCTGGAAGTGGGAAAAGTCCTTTCTTTTTCCTGAAAGGGTTTCAGAAGAAGCCACTTTCTTCTTTTGGGAAGCCTAGTTTGGGAAAGCAGGGATCTAAAGTTTTTATTCAGATGGATAAACATGATGTTAGCCAAGAGAGGGAGAAGGTGGAGCAACTGCTACTTGAACCAACTATTAATCAAGCAATCATATGCGACAATCTAAAAAAGGTCTATCCCGGGAGGGATGGTAATCCAGATAAGTTGGCAGTAAGAGGCTTATCCCTTGCTTTGCCAAACGGGGAGTGCTTCGGTATGCTTGGTCCCAATGGTGCCGGGAAGACCTCATTTATCAATATGATGATTGGCCTCACAAAGCCAACGGCCGGCACAGCATTTGTTCAAGGTTTGGACATAAGAACTCATATGAATGGAATATATACTAGCATGGGTGTCTGTCCACAACATGACTTGCTGTGGGAAACCCTGACAGGAAGAGAACACCTACTCTTTTATGGAAGACTTAAGAATCTTAAGGGTTCAGCCTTAACACAAGCAGTTGAAGAATCATTGAAGAGTGTAAACCTTTTTCATGGAGGAGTTGATGATAAACAAGCTGGAAAATACAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGATCCTAGAGTTGTTTACATGGATGAGCCAAGTACTGGATTGGATCCAGCATCAAGAAACAACTTGTGGAATGTTGTTAAGCACGCGAAACGGGATCGTGCTATCATCCTCACCACACATTCCATGGAAGAAGCAGAGGTCTTATGTGATCGGTTAGGAATATTCGTCGATGGAAGCTTGCAGTGCATAGGAAATCCAAAGGAGCTGAAAGCCAGATATGGAGGAACTTATGTTTTCACAATGACAACAACTATGGATCACGAGAAGGATGTGGAGGCCATGGTGCAACAACTCTACCCAGCTGCTAAGAAGGTATACCACATCTCCGGAACCCAGAAGTTTGAGCTCCCCAAAGAAGAGGTTCAGATAGCAAGTGTGTTCCGAGCCGTCGAAACTGCGAAGAGAAACTTCACGGTCTCGGCATGGGGTTTAGCTGACACCACGCTAGAAGATGTCTTCATCAAGGTTGCACGTGACGCTCAGGCATTTGAGACATTGTCTTAG 1275 0.4392 MRWGDLNNSTNGMKEVLIIMFVEWILVLFFAYYLDQVFTSGSGKSPFFFLKGFQKKPLSSFGKPSLGKQGSKVFIQMDKHDVSQEREKVEQLLLEPTINQAIICDNLKKVYPGRDGNPDKLAVRGLSLALPNGECFGMLGPNGAGKTSFINMMIGLTKPTAGTAFVQGLDIRTHMNGIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFHGGVDDKQAGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRNNLWNVVKHAKRDRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPKELKARYGGTYVFTMTTTMDHEKDVEAMVQQLYPAAKKVYHISGTQKFELPKEEVQIASVFRAVETAKRNFTVSAWGLADTTLEDVFIKVARDAQAFETLS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60865g00004 424 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 102 339 IPR003439 GO:0005524
Stsc60865g00004 424 FunFam ABC transporter A family member 7 91 367 - -
Stsc60865g00004 424 Pfam ABC transporter 124 268 IPR003439 GO:0005524
Stsc60865g00004 424 SMART AAA_5 132 315 IPR003593 GO:0016887
Stsc60865g00004 424 ProSitePatterns ABC transporters family signature. 241 255 IPR017871 GO:0005524|GO:0016887
Stsc60865g00004 424 Gene3D - 94 336 IPR027417 -
Stsc60865g00004 424 CDD ABC_subfamily_A 102 327 - -
Stsc60865g00004 424 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 69 418 IPR026082 GO:0016020|GO:0055085|GO:0140359
Stsc60865g00004 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 330 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60865g00004 Stsc-Chr60865 18899 24025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60865g00004 106 326 Calmodulin-binding Proteins AT2G36910 23.377 1.11e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60865g00004 - - gmx:100805474 756.518