Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60861g00007 ATGAGAGGCGTTCGGTGTGAGAAAAGTGGGATGAGGAAAGGGACATGGACTCCTGAAGAAGACAAGAAGTTGGTTGATTATGTTACTAGGTATGGCCACTGGAATTGGAACCTACTCCCCAAGTTCGCAGGTCTTGAAAGATGTGGCAAGAGTTGCAGGCTAAGATGGCTGAATTACTTGAGGCCAAACCTGAAGAGAGGAAACTATAGTGAAGAAGAGGAAGAAACTATTGTGAAGCTGCACCGACGCTTAGGAAACAGGTACATATGGCCGAATGTCGCCCTTATCTAA 291 0.4605 MRGVRCEKSGMRKGTWTPEEDKKLVDYVTRYGHWNWNLLPKFAGLERCGKSCRLRWLNYLRPNLKRGNYSEEEEETIVKLHRRLGNRYIWPNVALI 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60861g00007 96 Gene3D - 13 65 - -
Stsc60861g00007 96 PANTHER MYB DOMAIN PROTEIN 55 5 88 - -
Stsc60861g00007 96 SUPERFAMILY Homeodomain-like 14 89 IPR009057 -
Stsc60861g00007 96 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Stsc60861g00007 96 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Stsc60861g00007 96 SMART sant 12 62 IPR001005 -
Stsc60861g00007 96 ProSiteProfiles Myb-like domain profile. 61 96 IPR001005 -
Stsc60861g00007 96 FunFam MYB-related transcription factor 12 65 - -
Stsc60861g00007 96 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Stsc60861g00007 96 CDD SANT 15 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60861g00007 Stsc-Chr60861 40712 42103 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60861g00007 6 94 MYB Transcription Factor Family AT4G21440 64.045 1.12e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc60861g00007 Myb_DNA-binding 3.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60861g00007 K09422 - gmx:100778518 171.014