Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60861g00005 ATGGTTAGAACCCCTTATCACTGTGAGAAAAGTGGAGTGAGGAAAGGAACATGGACACCAGAGGAAGACACCAAGTTGATTCATCATCTTTCTAAGTTTGGTCACCCCTCCAACTGGCGCCTACTACCCAAAGCTGCAGGTCTTGCAAGGTGCGGAAAGAGCTGCAGATTCAGGTGGATGAATTATTTAAGGCCAGATGTCAAAAGAGGGAATTTCACACAAGAAGAAGATGATACTATACTCAAATTACACAATCAGTTTGGCAATAGATGGTCCATGATTGCGTCTCACTTGCATGGAAGATCAGACAACGAGATAAAAAATCGGTGGAACTCCCACCTCAAGAAGCGATTCCAACACACTTCAGTCTCCACCAAGTCAAACAATCATAATAATACCCTAATTGAATCAAAGGAAGAAGAGACAGTAGTGAATAATAATAATAATAATAATAATAATAACAATAACAATAATAATAATAATAATCTTCACAACATTTCTTCTCCAGCCTCTTCACAAATCCATACATATGACAATGTTTTTCCATTGAGCGATTTTTTCAACCCATCTGGTGACAATGAGTATGCTAATTTCCTGGATAATATGGAAGAGAGGGACATAATGCCAAATGGTTCGGATTATGTTTATTGGACTCGTCAACGGGGTTGTTTAAGTCCAGTCTATGAGGTACAACTTTGGAATTTATAG 708 0.3842 MVRTPYHCEKSGVRKGTWTPEEDTKLIHHLSKFGHPSNWRLLPKAAGLARCGKSCRFRWMNYLRPDVKRGNFTQEEDDTILKLHNQFGNRWSMIASHLHGRSDNEIKNRWNSHLKKRFQHTSVSTKSNNHNNTLIESKEEETVVNNNNNNNNNNNNNNNNNNLHNISSPASSQIHTYDNVFPLSDFFNPSGDNEYANFLDNMEERDIMPNGSDYVYWTRQRGCLSPVYEVQLWNL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60861g00005 235 ProSiteProfiles Myb-like domain profile. 10 63 IPR001005 -
Stsc60861g00005 235 SMART sant 14 65 IPR001005 -
Stsc60861g00005 235 SMART sant 68 116 IPR001005 -
Stsc60861g00005 235 Pfam Myb-like DNA-binding domain 15 63 IPR001005 -
Stsc60861g00005 235 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Stsc60861g00005 235 Gene3D - 7 68 - -
Stsc60861g00005 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Stsc60861g00005 235 FunFam Transcription factor RAX3 8 69 - -
Stsc60861g00005 235 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 173 - -
Stsc60861g00005 235 CDD SANT 17 63 IPR001005 -
Stsc60861g00005 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Stsc60861g00005 235 CDD SANT 71 114 IPR001005 -
Stsc60861g00005 235 Gene3D - 71 117 - -
Stsc60861g00005 235 MobiDBLite consensus disorder prediction 121 170 - -
Stsc60861g00005 235 SUPERFAMILY Homeodomain-like 12 110 IPR009057 -
Stsc60861g00005 235 MobiDBLite consensus disorder prediction 119 170 - -
Stsc60861g00005 235 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60861g00005 Stsc-Chr60861 35350 36771 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60861g00005 1 121 MYB Transcription Factor Family AT1G06180 64.463 2.36e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc60861g00005 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60861g00005 K09422 - gmx:106799185 194.897