Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60860g00006 GATACAAAGCAGGACATTCAGGCACAGCCTAACCAGGCTGAGCCAACAGTGAGAAACAGAGAAATTCCTCCTGTGCAAGATCAAGAAGATGAGCTTGACAACCAAAAAAGGCACTTGAATGTTGTATTCATTGGCCATGTTGATGCTGGGAAGTCAACAACCGGAGGGCAGATACTTTTCCTCAGTGGTCAGGTTGATGAAAGGACTATACAGAAATATGAGAAAGAAGCTAAAGATAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGGGTGAAGGGAAAAACCGTTGAAGTTGGAAGAGCGCATTTTGAGACAGAATCAACACGGTTTACAATTTTGGATGCACCTGGTCACAAAAGCTATGTCCCTAACATGATTAGTGGTGCATCTCAAGCTGATGTTGGAGTGTTGGTAATTTCCGCTCGAAAGGGAGAATTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACATTGGGTGTGACTAAGCTGCTTGTTGTTGTAAATAAAATGGATGATCCAACTGTGAACTGGGCAAAAGAAAGGTATGATGAGATTGAGTCAAAGATGATTCCATTTCTGAAACAATCAGGATATAATGTGAAGAAAGATGTCATGTTTTTGCCAATATCTGGGCTGATTGGTGCCAACTTGCAAACAAGAGTGGATAAAAGCATTTGCTCATGGTGGGATGGCCCTTGCTTATTTGAAGCGCTTGATGCCGTTGAAGTTCCTTTACGAGATCCCAAAGGCCCTTTCAGGATGCCTATACTTGATAAATTCAAAGACATGGGAACTGTCGTTATGGGAAAAGTGGAATTTGGTAGTGTCCGAGAGGGAGATTCCTTATTGGTCATGCCAAATAAGGATCAAGTTAAAGTTGTTGCTGTATTCATTGATGAAAATCGGGTTAGGCGTGCAGGACCCGGTGAAAATTTACGGATTAGGTTATCTGGTGTTGAAGAAGAGGACATATTATCTGGGTTTGTCCTGTCTTGTGTCGCAAATCCAGTTCCAGCTGTTACTGAGTTTGTTGCTCAGCTGCAAATCCTTGAATTGCTGGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTATTGCATATACACTCTGTTGTTGAAGAATGTGAAATTGTTGAGCTGTTACAGCAAATAGATCCAAAGACAAAGAAACCAATGAAAAAGAAAGTGTTATTTGTGAAGAATGGTGCTGTTGTTGTGTGCCGTGTACAGGTTAGTAACACGATATGTGTTGAGAAGTTTTCTGATTTTCCACAACTAGGGAGATTCACTCTTCGCACAGAAGGAAAAACTGTTGCGGTGGGAAAAGTCACTGGTGTTTAA 1389 0.4147 DTKQDIQAQPNQAEPTVRNREIPPVQDQEDELDNQKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADVGVLVISARKGEFETGYERGGQTREHVQLAKTLGVTKLLVVVNKMDDPTVNWAKERYDEIESKMIPFLKQSGYNVKKDVMFLPISGLIGANLQTRVDKSICSWWDGPCLFEALDAVEVPLRDPKGPFRMPILDKFKDMGTVVMGKVEFGSVREGDSLLVMPNKDQVKVVAVFIDENRVRRAGPGENLRIRLSGVEEEDILSGFVLSCVANPVPAVTEFVAQLQILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDPKTKKPMKKKVLFVKNGAVVVCRVQVSNTICVEKFSDFPQLGRFTLRTEGKTVAVGKVTGV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60860g00006 462 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 36 265 IPR000795 GO:0003924|GO:0005525
Stsc60860g00006 462 CDD eRF3_II 267 346 - -
Stsc60860g00006 462 FunFam Putative translation elongation/initiation factor family protein 354 462 - -
Stsc60860g00006 462 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 264 350 - -
Stsc60860g00006 462 Pfam Elongation factor Tu GTP binding domain 36 242 IPR000795 GO:0003924|GO:0005525
Stsc60860g00006 462 MobiDBLite consensus disorder prediction 1 29 - -
Stsc60860g00006 462 CDD eRF3_C_III 354 460 - -
Stsc60860g00006 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 271 IPR027417 -
Stsc60860g00006 462 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 356 461 IPR009001 -
Stsc60860g00006 462 CDD EF1_alpha 40 260 - -
Stsc60860g00006 462 Gene3D Translation factors 265 349 - -
Stsc60860g00006 462 SUPERFAMILY Translation proteins 259 352 IPR009000 -
Stsc60860g00006 462 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 92 107 IPR031157 -
Stsc60860g00006 462 Gene3D - 20 260 IPR027417 -
Stsc60860g00006 462 Pfam Elongation factor Tu C-terminal domain 353 462 IPR004160 -
Stsc60860g00006 462 PANTHER TRANSLATION FACTOR 29 461 - -
Stsc60860g00006 462 PRINTS GTP-binding elongation factor signature 135 146 IPR000795 GO:0003924|GO:0005525
Stsc60860g00006 462 PRINTS GTP-binding elongation factor signature 119 129 IPR000795 GO:0003924|GO:0005525
Stsc60860g00006 462 PRINTS GTP-binding elongation factor signature 40 53 IPR000795 GO:0003924|GO:0005525
Stsc60860g00006 462 PRINTS GTP-binding elongation factor signature 179 188 IPR000795 GO:0003924|GO:0005525
Stsc60860g00006 462 MobiDBLite consensus disorder prediction 1 16 - -
Stsc60860g00006 462 Gene3D Translation factors 355 462 - -
Stsc60860g00006 462 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 17 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60860g00006 Stsc-Chr60860 35804 42030 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60860g00006 32 462 Eukaryotic Initiation Factors Gene Family AT5G60390 37.097 2.24e-95 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60860g00006 K03267 - gmx:100784412 801.586