Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60858g00011 ATGAAGTGCATATGTGAAAAAGACTCTTCTCTATGTTCTGTTCATTCAACACCAGCCTATGTTCTTGGATGCTCATCATCATGGGGGAATTCTTCTGAGTCTGATGTTGTCCAACACTCATCCATGTCTGATAAATTGAGCTTAAACATGGGTGTTGTTCTGCCACAACAATGTCACAAGAGTAAGCAGGATTCATCTTCAACTCTTTCCACCAATCAATCTGGTCAAATTTCTATCCAGCATAGCAATTCTTCTGCTTGTTCATCATCACCACTTAGCAGAAATGTGGACATGATTGCTGGAAATCAAATCAGTTCTTCTATGGGGACTCTTGATTTTTCCTTCCCTCCTTCGGAACTCGACCGCGGACAATCAACTGCTCCAATTGCACTCCATTATGCATATCCATACTATGGTGGCATAATAGCTGCTGCATATGGCCAACATTCTAAGGTAATTGGAACTGCACCAGTTAGGATTCCTCTGCCACTTGATCTAAGAGAAGAACCAATATATGTGAATTCAAAGCAGTATCATGCTATTCTGAGACGTAGACAGTACCGAGCTAAACTTGAAGCACATAACAAACTCATCAAAGATAGGAAACCATATCTTCACGAATCTCGGCATCTACACGCATTAAAGAGAGCTAGAGGTGCTGGTGGACGCTTTCTTAATACTAAGAATCATGATGAAGAATCAAAGGCTATTACTTCAGCAAACATGTCACACTCCAAAATGCATGAGGTAGAAAATTACTTAGATGCTGCTTCTACCACCACCACCACTACCAGCTACCATGCTTACATTGGAAGGGATATCCTGGACTATACGGCGGATAAGCGTGGCCGCGGCAATCACCGGAGTGTGTCTGTCCTCATGTGA 885 0.4237 MKCICEKDSSLCSVHSTPAYVLGCSSSWGNSSESDVVQHSSMSDKLSLNMGVVLPQQCHKSKQDSSSTLSTNQSGQISIQHSNSSACSSSPLSRNVDMIAGNQISSSMGTLDFSFPPSELDRGQSTAPIALHYAYPYYGGIIAAAYGQHSKVIGTAPVRIPLPLDLREEPIYVNSKQYHAILRRRQYRAKLEAHNKLIKDRKPYLHESRHLHALKRARGAGGRFLNTKNHDEESKAITSANMSHSKMHEVENYLDAASTTTTTTSYHAYIGRDILDYTADKRGRGNHRSVSVLM 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60858g00011 294 Gene3D - 167 229 - -
Stsc60858g00011 294 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 54 253 IPR001289 GO:0003700|GO:0006355
Stsc60858g00011 294 SMART cbf3 166 227 IPR001289 GO:0003700|GO:0006355
Stsc60858g00011 294 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 169 224 IPR001289 GO:0003700|GO:0006355
Stsc60858g00011 294 ProSiteProfiles NF-YA/HAP2 family profile. 167 227 IPR001289 GO:0003700|GO:0006355
Stsc60858g00011 294 MobiDBLite consensus disorder prediction 62 90 - -
Stsc60858g00011 294 PRINTS CCAAT-binding transcription factor subunit B signature 170 192 IPR001289 GO:0003700|GO:0006355
Stsc60858g00011 294 PRINTS CCAAT-binding transcription factor subunit B signature 201 224 IPR001289 GO:0003700|GO:0006355
Stsc60858g00011 294 ProSitePatterns NF-YA/HAP2 subunit signature. 172 192 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60858g00011 Stsc-Chr60858 36868 39404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60858g00011 15 262 CCAAT-HAP2 Transcription Factor Family AT1G17590 38.489 1.40e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Stsc60858g00011 CBFB_NFYA 6.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60858g00011 K08064 - gmx:100803893 253.447