Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60858g00006 ATGTCTAACACTAATAAAGCTGGTCAAGTCATTAAGTGCAGAGCTGCGGTTGCATGGGAAGAAGGGAAGCCACTGGCCATAGAAGAAGTAGAGGTAGCACCACCAGAAGCTGGTGAAGTTCGGTTGAAGATCCTCTACACTAGTCTTTGTCATTCTGATCTTTACTTCTGGAAGAGTAGGGATGGTGGGAATTTGTTGTTTCCCCGCATACTCGGTCATGAAGCTGCAGGGATTGTGGAGAGCATAGGGGAGGGTGTGACAAATCTGAAGCCGGGAGACCATGTGCTACCTGTGTTCACCGGAGAATGCGGCGAATGCCGGAGCTGCAAGTCTGAAGAGAGCAACCTCTGTGATGTCCTCAGGCTCAACACTGATTCTGGTGTCATGCTCAGTGATGGAAAATCAAGATTCTCCAAAGATGGAAAACCAATTTACCACTTCCTTGGAACTTCCACATTCAGTGAATACACTGTTTCACATGCTAAGTGTGTTATCAAGATCAACCCTGCTGCTCCACTTGACAAAGTTTGTGTTCTCAGTTGTGGAATCTGCACAGGACTTGGTGCAACTTTAAATGTGGCAAAACCAAAGCCTGGTTCTACTGTTGCTGTCTTTGGATTGGGAGCAGTTGGTCTTGCTGCTGCTGAAGGGGCAAGGCTTTCTGGTGCATCAAGAATAATTGGAGTTGATATACTTTCCAGCAGAAAGGAACAAGCAAAAAAGTTTGGAATCACAGACTTTGTGAACCCAAAAGATCATGACAAACCTGTGCAACAGGTGCTTGTTGAAATGACCGATGGAGGAGTTGATCGCGCGCTTGAATGCACTGGAAAAGTAGAAGCCGCGATTGCAGCATTTGAATCTGTTCATGATGGTTGGGGTGTTGCTGTGCTTGTTGGTCTGCCTGGCAATGAAGATGAATTCAAGACTAAAACCATGAACTTCTTGTATGAGAGGACTGTTAAGGGTACCTTCTATGGGAATTACAAACCACTCTCTGATATTCCCTCTGTTGTGGAGAAGTACATGAACAAAGAGCTAGAATTGGAGAAGTTCATCACTCACTCAGTCCCATTCTCTGAGATTAATAAATCATTTGATTTAATGTTGAAAGGAGAGTCAATTAGGTGCCTCATCTGCATGGAAGGCTGA 1152 0.4497 MSNTNKAGQVIKCRAAVAWEEGKPLAIEEVEVAPPEAGEVRLKILYTSLCHSDLYFWKSRDGGNLLFPRILGHEAAGIVESIGEGVTNLKPGDHVLPVFTGECGECRSCKSEESNLCDVLRLNTDSGVMLSDGKSRFSKDGKPIYHFLGTSTFSEYTVSHAKCVIKINPAAPLDKVCVLSCGICTGLGATLNVAKPKPGSTVAVFGLGAVGLAAAEGARLSGASRIIGVDILSSRKEQAKKFGITDFVNPKDHDKPVQQVLVEMTDGGVDRALECTGKVEAAIAAFESVHDGWGVAVLVGLPGNEDEFKTKTMNFLYERTVKGTFYGNYKPLSDIPSVVEKYMNKELELEKFITHSVPFSEINKSFDLMLKGESIRCLICMEG 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60858g00006 383 CDD alcohol_DH_plants 11 379 - -
Stsc60858g00006 383 Gene3D - 22 373 - -
Stsc60858g00006 383 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 72 86 IPR002328 GO:0008270|GO:0016491
Stsc60858g00006 383 Pfam Zinc-binding dehydrogenase 209 329 IPR013149 -
Stsc60858g00006 383 PANTHER ALCOHOL DEHYDROGENASE 8 379 - -
Stsc60858g00006 383 SUPERFAMILY GroES-like 7 189 IPR011032 -
Stsc60858g00006 383 FunFam Alcohol dehydrogenase class-P 186 324 - -
Stsc60858g00006 383 FunFam Alcohol dehydrogenase 6 16 197 - -
Stsc60858g00006 383 SUPERFAMILY GroES-like 332 379 IPR011032 -
Stsc60858g00006 383 Pfam Alcohol dehydrogenase GroES-like domain 38 167 IPR013154 -
Stsc60858g00006 383 Gene3D - 186 324 - -
Stsc60858g00006 383 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 172 345 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60858g00006 Stsc-Chr60858 23188 25431 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60858g00006 39 373 Monolignol Biosynthesis Gene Families AT1G72680 26.176 1.01e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60858g00006 K18857 - ming:122088951 604.749