Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60858g00005 ATGGCTTCTTCTGCATCCATTGTGTATGATGTGTTCCTGAGTTTCAGAGGCACAGACACTAGGAGAGGTATTCTTAGCCATTTGGTTAAGGCTTTAAACCAAAAGCAAATTGAGACATATGTGGATTACATGCTGAGGGAAGGAACTGAAATATCACACTCACTTCTCAGTGCCATTGAACAATCACAAATCTCTTTGATCATATTCTCCCAAGACTATGCTTCTTCCAGATGGTGCTTGGATGAACTTGTGACCATAATGAGATGCAGGAAACAAAATGGTCAGATTGCAATACCTGTTTTCTATGAAGTGGATCCATCTTGGGTTCGCCATCAGAAGGGAACTTATCATGATGCATTTGCTCATCATGAGAAAAATTCATCATCAGGGGACAAGATTCCAATCTGGAGACAAGCTCTCAATCAAGCTGCTAATTTGTCTGGATTACATTCATCAAGCTTTGGGAACGATGCTGAATTTGTTGAGGAAATTGTGAAACGTGTGTTGCAAAGGTTGAACCAAGCATACCAATATGATCCAAAAGAATTTGTGGGAATTCATGAACCAATTGCAGAGCTAGAATCAGTATTGTGCAGGGAATCCAAAGCTGTTCTTGTTATCGGACTTTGGGGCATGGGCGGTATCGGTAAGACAACTCTTGCAAGCATGCTTTTCAACAGATTGCAGTATGAATTTCAAGGTATATGCTTCTTGGAGAATGTAAGGGATAGAGCTCATCAGAGATATGGCATGACTCATCTGAAGAAAGAGCTTCTTTCTAAACTGCTAGAGGAAAAAGATGTAGACCCCTTCATTATGCCTAATGGAATAACCAATTTTGCCAAGAGAAGACTTAGCAGAAAGAGAATTCTTCTTGTTCTTGATGATGTCAATGATGCAGACCAATTGGAAGATTTATGTGGAGGAGGATTTGAGTGGTTTGGACCAACTACTAGGATTATAGTAACAACAAGGGATAAACATGTGTTACTTGTTAAACAAGTTAATCACATACATGAGGTTAAGCCATTGAATGATGGTGAATCTCTCAAGCTTTTTAATTTGAATGCCTTCAAACAAAACTATGAGATTGAAAGAGACCAAGATCATGCTGAGCTAGCCATGAAGCTGGTTAACTATGCTAATGGCATTCCACTGGCTTTAAAAGTTCTGGGCTCCTCTCTTTATGGAAAAAGCAAAGAAGAGTGGGAAAGTCAACTCTCTAAGCTTGAGAAAATGCCTCATGTCAAGGTTCAGAATATATTGAGAGTGAGTTATGATGACTTGGATCGTCATGATCAAAATATTTTTTTGTATATTGCATGTTTCTTTGAAACATATAATGCAGAAAACATAAAATGTCTGCTTGATTCTTGTGGATATTCAACAGCAATTGGGTTGAGAAATCTTCATGATAAAGCTCTTATTTCCATGGCCCCAAAATATATGACAATTCATGACTTGATTCGGGACATGGGCCGCGAAGTTGTTCGTGAAGAATCTCTGAGTAGTCCTGGAAATCGTAGCAGATTATGGGATCCCATTGAAATCTATGAAGTATTGGAACATAACAGGGGAACTGAAACTGTTGAAAGCATAACATTCGACATGGCGAATATTGACATGCATTTGAGTTTGCATCCCCGGGCATTTGCAAGAATGTACAAGTTGAAGTTTCTGAGTATTTATTTTTCGAGGAGGGCGGAATATCTGTTGCTTGCTCCTCAAGGTATTGAGTCTCTTTCAGAAGAGTTGAGACTTTTGGAATGGGCTGCATGCCCTTTGAAATCTTTGCCATCATCTTTCTGTGCTGAAAACCTTGTTAAAATCATGATGATGGATAGCAGCTTGGAAAAACTTTGGGATGGTATCCAGAGTGGTTATGGACGTAGTAACTGCGGTTTCATTGATGATTTTCAGAATATTGTAAATTTAAAGGAAGTATATCTTCGAGGATCTAAGAAGCTAATGGAGTTGCCAGATTTGTCAAGAGCCTCAAAGCTTCAAGTATTAGACATTTCTCAGTGTGAGAGTCTGCGTCAAGTTCCCCCATCTATTGCATCATGCCACAAACTGGTTGAGCTCTATGTTCATAGATGTTATGAGCTTGGTAGTTTCCAACACTACATCCATCTAGAATCTCTCAAGATACTCTTCCTTGACAATTGCACAAGTCTCAGAGAGTTCTCATTGTTATTGTCAACTGATAGTGACAAATTTCCAGCCACCTCTCCACTAGAAAATTTAGGTTTGGTTGGTTGTTCTAATCTTTCTCTGCTGCCACACAACATAGGCATGCTCTCATCATTGAAGTACTTGTCACTTTGTTGGAGCAACATAACCTCTTTGCCTGAAAGCATCAAGCATCTTTCACTTCTGAAATCCCTTGACTTGAGGGGTTGTGAGAGGCTTCAGTCTTTGCCGGAGCTTCCATCATCTATTTCAGAATTAGTTGTTATAGACTGCACCTCATTAGAGAAGATTACTGGATTTGCATACTCAAGTTTCAAACAAGAGCAGATTGAGAGCGAAATCTTTGCTTTCGCCAACTGCATAAAGTTAGACAAGCTTACAAAGAAGGTAATCATGGAAGATGCGTTTATCAGAGTAAAGAGAGCAGCACTTACATGTCTAGCAGCAATAAACGAGAACGAGGACGAGGATAGAAGAGCATCATCACTTGTTAATCCACACTATCACTACAAGGTGCAGGGTTGCATGCTAGAGAATGAGATTGATAACGACGATGCAAGAGAAGAATATGAATATCAATATCAACACGGGGTTCAGTTTTGTTTCCCTGGCAAACAAGTTCCAGGTTGGTTCACTCATAGAACCGCAGAGACCATGATGACAATTGAACTTGTCCTCTCTCAGAGGGACAGGTTCTTAGGTTTCATGTTATGTGTTGTTCCTAAAGAGAGCAGTAGTAGTTCTGGAATCTTGGGATGTGAATATTGCATTGAAGGAGGGAGAGATGGGAAAAGTGTGGAGTATAGCAGCTGGTGGAAGCCAAGTCCGAAGAAAGGTGTTTGTGAGAATGTGTTTTTGTGGTATGTGGGAGAATGCTGCCTTGATATAGTGAGGGAAATGAAAGAAAATGTGTGTAGTAATAACTTGAAGGTTTCATTTCAATTCTCCATTATTAATGGTAGTAGGGATGACATAAAACAATGCGGTGTCCACCCCATTTATGCATCTGATATGTTGAAACAAGGGGTTGTGGTGACAGACATGGATGATGAGAACGAGAATGAATGTGGTGATCAAGAAGAAGAAGAAGAAGTTTCTTTCTTGCATATAAATAAGAAACTTAAAATGTAG 3324 0.3956 MASSASIVYDVFLSFRGTDTRRGILSHLVKALNQKQIETYVDYMLREGTEISHSLLSAIEQSQISLIIFSQDYASSRWCLDELVTIMRCRKQNGQIAIPVFYEVDPSWVRHQKGTYHDAFAHHEKNSSSGDKIPIWRQALNQAANLSGLHSSSFGNDAEFVEEIVKRVLQRLNQAYQYDPKEFVGIHEPIAELESVLCRESKAVLVIGLWGMGGIGKTTLASMLFNRLQYEFQGICFLENVRDRAHQRYGMTHLKKELLSKLLEEKDVDPFIMPNGITNFAKRRLSRKRILLVLDDVNDADQLEDLCGGGFEWFGPTTRIIVTTRDKHVLLVKQVNHIHEVKPLNDGESLKLFNLNAFKQNYEIERDQDHAELAMKLVNYANGIPLALKVLGSSLYGKSKEEWESQLSKLEKMPHVKVQNILRVSYDDLDRHDQNIFLYIACFFETYNAENIKCLLDSCGYSTAIGLRNLHDKALISMAPKYMTIHDLIRDMGREVVREESLSSPGNRSRLWDPIEIYEVLEHNRGTETVESITFDMANIDMHLSLHPRAFARMYKLKFLSIYFSRRAEYLLLAPQGIESLSEELRLLEWAACPLKSLPSSFCAENLVKIMMMDSSLEKLWDGIQSGYGRSNCGFIDDFQNIVNLKEVYLRGSKKLMELPDLSRASKLQVLDISQCESLRQVPPSIASCHKLVELYVHRCYELGSFQHYIHLESLKILFLDNCTSLREFSLLLSTDSDKFPATSPLENLGLVGCSNLSLLPHNIGMLSSLKYLSLCWSNITSLPESIKHLSLLKSLDLRGCERLQSLPELPSSISELVVIDCTSLEKITGFAYSSFKQEQIESEIFAFANCIKLDKLTKKVIMEDAFIRVKRAALTCLAAINENEDEDRRASSLVNPHYHYKVQGCMLENEIDNDDAREEYEYQYQHGVQFCFPGKQVPGWFTHRTAETMMTIELVLSQRDRFLGFMLCVVPKESSSSSGILGCEYCIEGGRDGKSVEYSSWWKPSPKKGVCENVFLWYVGECCLDIVREMKENVCSNNLKVSFQFSIINGSRDDIKQCGVHPIYASDMLKQGVVVTDMDDENENECGDQEEEEEVSFLHINKKLKM 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60858g00005 1107 Gene3D - 170 339 IPR027417 -
Stsc60858g00005 1107 Pfam Leucine Rich Repeat 606 625 IPR011713 -
Stsc60858g00005 1107 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 440 IPR027417 -
Stsc60858g00005 1107 Gene3D - 343 430 IPR042197 -
Stsc60858g00005 1107 PRINTS Disease resistance protein signature 206 221 - -
Stsc60858g00005 1107 PRINTS Disease resistance protein signature 381 395 - -
Stsc60858g00005 1107 PRINTS Disease resistance protein signature 284 298 - -
Stsc60858g00005 1107 PRINTS Disease resistance protein signature 788 804 - -
Stsc60858g00005 1107 Gene3D Ribonuclease Inhibitor 736 860 IPR032675 -
Stsc60858g00005 1107 ProSiteProfiles TIR domain profile. 7 172 IPR000157 GO:0007165
Stsc60858g00005 1107 Gene3D Ribonuclease Inhibitor 523 735 IPR032675 -
Stsc60858g00005 1107 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 730 IPR044974 GO:0006952
Stsc60858g00005 1107 Pfam C-JID domain 933 1068 IPR045344 -
Stsc60858g00005 1107 Pfam TIR domain 9 179 IPR000157 GO:0007165
Stsc60858g00005 1107 SMART till_3 8 146 IPR000157 GO:0007165
Stsc60858g00005 1107 SUPERFAMILY L domain-like 541 830 - -
Stsc60858g00005 1107 FunFam Disease resistance protein (TIR-NBS-LRR class) 5 174 - -
Stsc60858g00005 1107 SUPERFAMILY "Winged helix" DNA-binding domain 417 522 IPR036390 -
Stsc60858g00005 1107 Gene3D - 6 169 IPR035897 -
Stsc60858g00005 1107 Pfam NB-ARC domain 192 429 IPR002182 GO:0043531
Stsc60858g00005 1107 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 148 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60858g00005 Stsc-Chr60858 17710 21710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60858g00005 4 821 WRKY Transcription Factor Family AT4G12020 30.332 1.09e-101 352