Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60858g00004 ATGGCTTGGTCTGCTTCTTCTTCTTCCTCCGTTGCTTCTGAAAGCAAATATGATATCTTCCTTAGCTTCAGAGGCGCTGATACCCGCCGTGGTTTTCTTAGCCATCTGATTAAGGCTTTAAACCGAAAGCAGATTGAGACCTATGTTGACTATAACCTCAGAGAAGGAACCCAAATATCAGACTCACTCCTTACAGCCATTGAACAATCTGAGATTTCCTTGATTCTATTCTCCCAAGATTATGCTTCATCCAAGTGGTGCTTGGATGAACTCGCTAAAATAATCAAGTGCAGGAAAGAGAAAGGTCAAATAGCAATACCTATATTTTATGATGTAGATCCATCTTTGGTAAGACATCAAAGGGGAAGTTATCACCACGCACTTTCCCACCATCAGAACACGTCATCGCCGGAGCAGTTGCTCATATGGAAAGAAGCTCTCAATGAGGCTGCCAATTTGTCTGGTCTGCATTCATCCAATTTTGGGCAAGTTCTTTCAGTTTCACACTATGCCTTTAAATTGCAACTGTGTTTTATTTTAATCCCTTACTATTTCTGTGCTATACGTAACTGTTTCTATGCTACGGTATTTTTCGATGCTGATGTTTACATTTTCCGTGTTGTAAATAGGATGAGTGATGCTGCTCTTATTGACGAAATTGTGAAACGTGTGTTACAAAGGTTGAACGAAAAGTGCCAAGGTGATTTACAAGGACTTGTTGGAATGTATGAATCAATCACAGAGCTAGAATCATTGTTGTGCAGGGAATCAAAAGCTGTAGTTATTGTTGGACTTTGGGGCATGGGTGGCATTGGAAAGACTACTCTTGCTAGTGTTGTTTTCAATAGGGTATGTCATGAATTTGAAGGACTCTGCTTCTTGGACAATGTAAGAGAAAAAGTCCAGAAATATGGCATAAATCATTTGAAGAAAGAGCTTGTATCTAAGCTGCTGGACATTAAAGATGTAGAAAAAGATGTAGAGTCTTTCATCATGCCTATTGGAATAACTGATTTTGCCAAGAGAAGACTCCGTCGCAGAAAAGTTCTTCTTGTTCTTGATGATGTCAGTGATTCTAAGCAACTGGAAGATTTATGTGGAGGACATGATTGGTTTGGGCTAAGGAGTCGAATCATGGTGACAACTAGAGACAAACATGTGCTGAACAGAGCCGATCATATTCATGAGGTTAAGGCACTAGATCAGGATGAATCTCTTGAGCTTTTTAAGTTGAATGCCATGAAACAAAACTACATGGACACAGAGCAAGTTGAGCTATCCATGAGGGTTCTTAACTATGCTAAAGGAATTCCGTTAGCCTTAAAAATTATGGGTTCCTTTCTCTGTGGAAAAAGTATGCAAGAGTGGAGAAGTCAGCTTCTTAAACTTGAAAAGATACCTCATGTACAGATTCAAAATATATTGAGATTGAGTTATAACGAACTAGATCGCCATGATCGGAATATTTTTCTATACCTTGCATGTTTCTTCAAGACAGTTTCAGAAGAGCAGGTGACATCTCTTCTTGATGCGTGCGGATACTCGACAGCTATTGGGTTAAAAACTCTTCAAGACAAAGCTCTTATTTCCATTGTAAGCAGTGAAGTGACAATGCATGACTTGCTTCGAGAAATGGGACGTGAAGTAGTTCGCGAAGAATCTCCTGATGATCCGGGAAAGCACAGTAGATTATGGGATTCTACTGACATCTATAAAGTATTGAAATATGACATGGGAACTGAAACTATTGAAAGCTTAACATTAGACATGTCAAAAATTGATGTGCTAAGCTTGCATCCTTGCACATTTGCAAGAATGTACAAGCTCAAGTTTTTAAATGTTCATTCATGGGATATTGAGCATAGGCTCTGTGCTCCTCATGGAATTGAATCCTTGTCAGATGAGCTGAGATTTTTTCATTGGGAACACTACCCTTCGAAATCTTTACCATTCTCATTTTGTGCGGAAAATCTTGTGGAAATTATAATGCCATCTAGTCAGTTGGAGAAGCTTTGGGAAGGTGTCCAGAATCTTGTAAATCTGAAGCTAGTAGATGTTAATTATTCATCACACCTAGTCGAGCTCCCAGATTTCTCCAAGGCCCCAAATCTTGAAGAAGTAAATGTTTCCAACTGCAAGAGTTTGCAGCAAGTTCCCCTGTCTGTTTTGTCTTCTCAAAGGCTGGGTTATCTTTTTCTAAATGATTGTGATAAACTAAGCAGTTTCCAACACAACATTCATCATCAATCTCTTAAGACACTCTCCTTCTATAGCTGCATAAACCTCAGAGAGTTCTCGTTGGAACAGCTTGATGACGGCACAGACAAATCGGTGTTATCATCTCCGCTTGAACGGCTAAAACTGGATTACTGTTCCATCCTTTCTCTTCTGCCAGACAATATAAGCATGCTTTCATCATTGAAGGACTTATCAATGTGTCACAGCAGCGTGCGAAGCTTGCTCGAAAGCATTAAACATCTGTCACGGCTGAAATACCTCAACTTAAGCAATTGCAAGAGGCTTCAATCCATACCAGAGCTTCCATCATCCATTTTGGGGTTAAATGCTGTTAACTGCACGTCACTATGTACTGTATTCATGGCTGAACCAATGAAAGAAGAGAAATTCACATTTGAGTTTACCAATTGTGTAAAGTTGGAAAAGGCTGCAATCCAGGCCATTATGGCAAACACCTATCTCAGAATACAGCAAGCAGCAAACGCATGTCTACCAACAGCACAGCAGAATAACAACTATGAACTCAGGGTTCATGTTTGCTTACCAGGAAGCCAAGTTCCGGGATGGTTCAGCTATAGAACAACCGAAACTTCCATGAATGTTGAACTTGTCCTACTTGCTTCTAGTATCAGCAGGTTCCAGGGTTTCATCTTGTGTGCGGTTCTTCCTCCTAGAGAGGAGAAAGGCTTAGACCCTGGAAGTTTGAAATGTTCTTACTGCATTGAAAGGAGTGATGGTCCAAGTTTGAGGGGTTTTAGTTCGTGGGTGATATATGACCGTGCAGTTGATAAGGAATCCGAGAATGTGTATCTGTGGTATGATAGGCAATTCTGCATTCATATGAATATGATGATGAGGAGAAGGAAACAAAGCAAAGGAAGTGATGAGGATAATGTTCATAAGTACAAGGTTCTGTTTGACTTCGATTACTGCTTTCAGTCCACCAGAATAAAAGAGTGCGGTGTCCATCCAACGTATGTCTCGGATACTAAATCCAGGAGAACAGAGATGGTGGTGACTCAAGTTGATGAGAATGGTGGTGATCTAGAACTGCTGGAAGAACCACTTTCTTCCGCGAGTAAGAAATTTAAACACCCGGGACTGAACACTTAA 3351 0.4032 MAWSASSSSSVASESKYDIFLSFRGADTRRGFLSHLIKALNRKQIETYVDYNLREGTQISDSLLTAIEQSEISLILFSQDYASSKWCLDELAKIIKCRKEKGQIAIPIFYDVDPSLVRHQRGSYHHALSHHQNTSSPEQLLIWKEALNEAANLSGLHSSNFGQVLSVSHYAFKLQLCFILIPYYFCAIRNCFYATVFFDADVYIFRVVNRMSDAALIDEIVKRVLQRLNEKCQGDLQGLVGMYESITELESLLCRESKAVVIVGLWGMGGIGKTTLASVVFNRVCHEFEGLCFLDNVREKVQKYGINHLKKELVSKLLDIKDVEKDVESFIMPIGITDFAKRRLRRRKVLLVLDDVSDSKQLEDLCGGHDWFGLRSRIMVTTRDKHVLNRADHIHEVKALDQDESLELFKLNAMKQNYMDTEQVELSMRVLNYAKGIPLALKIMGSFLCGKSMQEWRSQLLKLEKIPHVQIQNILRLSYNELDRHDRNIFLYLACFFKTVSEEQVTSLLDACGYSTAIGLKTLQDKALISIVSSEVTMHDLLREMGREVVREESPDDPGKHSRLWDSTDIYKVLKYDMGTETIESLTLDMSKIDVLSLHPCTFARMYKLKFLNVHSWDIEHRLCAPHGIESLSDELRFFHWEHYPSKSLPFSFCAENLVEIIMPSSQLEKLWEGVQNLVNLKLVDVNYSSHLVELPDFSKAPNLEEVNVSNCKSLQQVPLSVLSSQRLGYLFLNDCDKLSSFQHNIHHQSLKTLSFYSCINLREFSLEQLDDGTDKSVLSSPLERLKLDYCSILSLLPDNISMLSSLKDLSMCHSSVRSLLESIKHLSRLKYLNLSNCKRLQSIPELPSSILGLNAVNCTSLCTVFMAEPMKEEKFTFEFTNCVKLEKAAIQAIMANTYLRIQQAANACLPTAQQNNNYELRVHVCLPGSQVPGWFSYRTTETSMNVELVLLASSISRFQGFILCAVLPPREEKGLDPGSLKCSYCIERSDGPSLRGFSSWVIYDRAVDKESENVYLWYDRQFCIHMNMMMRRRKQSKGSDEDNVHKYKVLFDFDYCFQSTRIKECGVHPTYVSDTKSRRTEMVVTQVDENGGDLELLEEPLSSASKKFKHPGLNT 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60858g00004 1116 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 167 - -
Stsc60858g00004 1116 Coils Coil 306 326 - -
Stsc60858g00004 1116 Pfam NB-ARC domain 250 483 IPR002182 GO:0043531
Stsc60858g00004 1116 Pfam C-JID domain 927 1076 IPR045344 -
Stsc60858g00004 1116 Gene3D - 399 483 IPR042197 -
Stsc60858g00004 1116 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 155 IPR035897 -
Stsc60858g00004 1116 PRINTS Disease resistance protein signature 434 448 - -
Stsc60858g00004 1116 PRINTS Disease resistance protein signature 262 277 - -
Stsc60858g00004 1116 PRINTS Disease resistance protein signature 343 357 - -
Stsc60858g00004 1116 PRINTS Disease resistance protein signature 825 841 - -
Stsc60858g00004 1116 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 766 IPR044974 GO:0006952
Stsc60858g00004 1116 Gene3D Ribonuclease Inhibitor 777 926 IPR032675 -
Stsc60858g00004 1116 ProSiteProfiles TIR domain profile. 15 228 IPR000157 GO:0007165
Stsc60858g00004 1116 Pfam Leucine Rich Repeat 657 676 IPR011713 -
Stsc60858g00004 1116 SUPERFAMILY L domain-like 551 886 - -
Stsc60858g00004 1116 Gene3D - 9 169 IPR035897 -
Stsc60858g00004 1116 Gene3D Ribonuclease Inhibitor 578 772 IPR032675 -
Stsc60858g00004 1116 Gene3D - 217 398 IPR027417 -
Stsc60858g00004 1116 Pfam TIR domain 16 157 IPR000157 GO:0007165
Stsc60858g00004 1116 SMART till_3 16 153 IPR000157 GO:0007165
Stsc60858g00004 1116 SUPERFAMILY "Winged helix" DNA-binding domain 470 575 IPR036390 -
Stsc60858g00004 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 493 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60858g00004 Stsc-Chr60858 13250 17191 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60858g00004 12 858 WRKY Transcription Factor Family AT4G12020 29.010 1.91e-95 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60858g00004 - - aip:107613764 1766.51