Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60857g00006 ATGGCATCTTCTTCTTCAGATGCTCCTAGAATCAAATATGATGTGTTCATCAGTTTTAGAGGAGAAGATATCCGTGATAGTTTTCTTAGCCATTTGACAAAAGAGTTGCGACACAGACAAATAGATTTCTTTGTTGACGAAGAAAAGGTTCACCCTGGAGATGAGATTTCATCCACACTACTTAAAGCAATTGAGGAATCATCCATTTCATTGGTCATCTTCTCGAAACACTATGCTTCTTCAAGATGGTGTATGGAGGAGCTCGTGAAGATAATTGAATGCATGAAACAATATCAAAGGATTGTGATACCTGTTTTTCACAACGTTGATCCTTCTGACGTAAGGCAACAGAAACAAACTTTTGCAGAGGCTTTTGATGTCCACAAAGAGAAGTATGAGGAGGAAAATTTGCAGAATTGGAGATTTGTTTTAAAGGAGGCAGCAAATTTGTCTGGAATTCATTATCCTTCAAAATATCGCAACGAATCTGAATTCATTGAAGCAATTGGGAAAGATATTTCGGAGAAATTGTCACATCAGTTTTCAAATGCATCCGAAGGCCTTATTGGAATTGATGAAAATCTTAAACTTATTGAACCTTTACTGGCAATTGAGTCTAATCATGAGGTTCGAATTGTGGGAATTTGGGGGATGGGAGGCATAGGTAAAACAACTATTGCTAAAGCAGTATTTGATAGATATGCTTCTCAATACGAAGGTTGCTGCTTTCTACAAAATGTAAGAGAAGAATCACAAAAGTCTAGTCCTCATTACTTGTATGAGAAACTTGTTTCTGAACTCCTTGAGGGTGAAAATCTCCTTGTGAAGGGATCGCCTCAAGCAAGATCTATGTATGTCAAGAAAATGTTGAGTCGGAAAAAGGTTCTCATAGTGCTTGACGATGTAGATACGTCAGACAAGTTAGATTATCTAACAAGAGAACAAATGTGTTTGGGAGCAGGTAGTAGGGTCATTGTAACAAGTAGAGACGAGCAAATACTAATAGCTGCAAGAGTGCATGGCATATACAAGGTCCAGGAATTGAGCTTTAAGAGTTCCCTTGAACTTTTTTGCTTAAAAGCTTTTCACAAAAGATATCCTGAAAATGGATATGAAAAGCTTTCACAAATGGCCGTTCATTATGCAAATGGCATTCCATTAGCTTTAAAAGTATTGGGATCCTTTTTATGCTCAAGAAGTGTCGTAGCTTGGGAAAGTGCTCTAGGAAAACTCAGGATTCATCCCGATCCAAGCATTTATTATGTGTTAAAGTTGAGTTATGATGGATTAGATTATTCAGAGAAGAACATATTCCTTGACATTGCATTCTTTTTCAAAGGAAAACACAAGGATAATGTCATAAGGTTTCTAGACTCTTGTGATTTCTTTGCTGAAATTGGAATAAACAATCTTGAACGTAAAGCTCTTATAACTATTTCCAATCATAGAATAGAAATGCATGACTTGATACAACAAATGGGTACGGAAATAGTTCGCCGAGAATCAAATAAAGATCCCCAAAAGCTCACTCGAATAAATAAACTTGAAGATTTCCACAATTTATTGAAAAATAGCGAGGAAAAAAGTCTAGTTGAAGGTATTATGATAAACTTGTCTGAAGCTAAAAATCTACAGATGAATGCCAGCACCTTCAGAAATATGCCTCGCCTAAGATTTCTTAAACTTTATAGCCGTTGGGGTGAAAGATCATGGAATGTGATTGTTCCTATGACTCTTGAGAAGTTTTCTGATGAACTAAGATATTTAGCATGGCCTAGATATCCTTTGAGTTATCTGCCGTCACCATTTTGTGCTGAGAAGCTTGTTGAGCTTCACATGCCAGACAGTCAGGTTACTAAACTCTGGGATGGAGTGCAGGATCTTGTGAATTTAAAGATAATTAACCTTTGGAAATGCAAACAGTTGGTTGAACTTCCAGATCTTAGTAAGGCAACAAATCTTGAGCTGATAGACATCTCCGATTGTGAAGCTTTGTGTGAACTTCACCCATCTATTATATCCAGCCCCGCACTAAAAAATCTGATACTTGATGGCTGCAAAGAACTGAAGAGTGTTAAAGGAGAGATTCGTTCCAAGTCTCTTAAAGTACTCTATTTTGGAGGTTGCTCAAGCCTAGAAGAATATTCGGTGTCGTCGGATCAGCTGAGTTCTTTGGATCTCAATTCCTCAAGAATTAGGATTCTTGGAAATGAGCTATGTTCCCTTACATGTCTGCAAAACCTTGAACTTTTTGATTGCAGAGAGCTAAGTGAACTCCCTCATAATATGAAAGCCTTATCAAGATTGCAGACACTGAATGTAAGTGGTTGCAGAAGTCTCCGATCTATACCAGAACTTCCATTATCTACTATGCGAGTATGTGCTGCTAACTGCACATCATTGGAAACAATATTCAGTTTAAAGGCAGTGTTCTGTTTGAGATGGATCTTTTTCAAGAATTGCAAGAGATTGGATGAAGAGTCACTGAATAGTATCATGGAAGATGCGCATGACACAATACTCAGAAAGATATTGTTGATGCAAGCAGAAAATGACAATTATTGGGATTCTAATGACATTGAAAAGAGGTTCAGTTGTGACGTTTGTTATCCAGGGAGCAAGGTGCCAGAGTGGTTCAGATGTCGAACAACAGAAGGAGCTTCCGTAACAGTTAAAATAGATAAACCTTGCTCCCAGTTATTGGGTTTCTGTGTCTCATGTGTTGTTTCTCAAGGGTTCTCTTCTTACAGTGTCTACTGTGGATACGACTTGGGAGATGGTGAAAAGTACATACTTGGAAGCTATTATCTAGGCAATAGATGGAACTCTGATCACGTTTTTCTTTGGTTCCATCCATTCTATACTAGCCGAATAATGAGTTCCATTGAAAGGTGCCTAGGCAGTAGGGATGATCATGCCACAACTTGGAACAAAACCATTTTATTCACATTCACTGCTGATGAAGAACTTACATCTAGACAGCAAGATTTCTTTATTAAAGGCTGTGGCGTTCTACCAATATATGCCTCAGATGTCCTCATCTCATTCCACAATTTGAATCGGTTTTGA 3069 0.3786 MASSSSDAPRIKYDVFISFRGEDIRDSFLSHLTKELRHRQIDFFVDEEKVHPGDEISSTLLKAIEESSISLVIFSKHYASSRWCMEELVKIIECMKQYQRIVIPVFHNVDPSDVRQQKQTFAEAFDVHKEKYEEENLQNWRFVLKEAANLSGIHYPSKYRNESEFIEAIGKDISEKLSHQFSNASEGLIGIDENLKLIEPLLAIESNHEVRIVGIWGMGGIGKTTIAKAVFDRYASQYEGCCFLQNVREESQKSSPHYLYEKLVSELLEGENLLVKGSPQARSMYVKKMLSRKKVLIVLDDVDTSDKLDYLTREQMCLGAGSRVIVTSRDEQILIAARVHGIYKVQELSFKSSLELFCLKAFHKRYPENGYEKLSQMAVHYANGIPLALKVLGSFLCSRSVVAWESALGKLRIHPDPSIYYVLKLSYDGLDYSEKNIFLDIAFFFKGKHKDNVIRFLDSCDFFAEIGINNLERKALITISNHRIEMHDLIQQMGTEIVRRESNKDPQKLTRINKLEDFHNLLKNSEEKSLVEGIMINLSEAKNLQMNASTFRNMPRLRFLKLYSRWGERSWNVIVPMTLEKFSDELRYLAWPRYPLSYLPSPFCAEKLVELHMPDSQVTKLWDGVQDLVNLKIINLWKCKQLVELPDLSKATNLELIDISDCEALCELHPSIISSPALKNLILDGCKELKSVKGEIRSKSLKVLYFGGCSSLEEYSVSSDQLSSLDLNSSRIRILGNELCSLTCLQNLELFDCRELSELPHNMKALSRLQTLNVSGCRSLRSIPELPLSTMRVCAANCTSLETIFSLKAVFCLRWIFFKNCKRLDEESLNSIMEDAHDTILRKILLMQAENDNYWDSNDIEKRFSCDVCYPGSKVPEWFRCRTTEGASVTVKIDKPCSQLLGFCVSCVVSQGFSSYSVYCGYDLGDGEKYILGSYYLGNRWNSDHVFLWFHPFYTSRIMSSIERCLGSRDDHATTWNKTILFTFTADEELTSRQQDFFIKGCGVLPIYASDVLISFHNLNRF 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60857g00006 1022 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 179 - -
Stsc60857g00006 1022 PRINTS Disease resistance protein signature 212 227 - -
Stsc60857g00006 1022 PRINTS Disease resistance protein signature 764 780 - -
Stsc60857g00006 1022 PRINTS Disease resistance protein signature 289 303 - -
Stsc60857g00006 1022 PRINTS Disease resistance protein signature 382 396 - -
Stsc60857g00006 1022 SMART till_3 12 150 IPR000157 GO:0007165
Stsc60857g00006 1022 Pfam NB-ARC domain 197 412 IPR002182 GO:0043531
Stsc60857g00006 1022 Pfam TIR domain 12 183 IPR000157 GO:0007165
Stsc60857g00006 1022 Gene3D - 178 340 IPR027417 -
Stsc60857g00006 1022 Gene3D Ribonuclease Inhibitor 710 873 IPR032675 -
Stsc60857g00006 1022 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 152 IPR035897 -
Stsc60857g00006 1022 SUPERFAMILY L domain-like 534 824 - -
Stsc60857g00006 1022 Gene3D - 11 177 IPR035897 -
Stsc60857g00006 1022 Gene3D - 348 431 IPR042197 -
Stsc60857g00006 1022 Pfam Leucine Rich Repeat 607 626 IPR011713 -
Stsc60857g00006 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 441 IPR027417 -
Stsc60857g00006 1022 ProSiteProfiles TIR domain profile. 11 177 IPR000157 GO:0007165
Stsc60857g00006 1022 Pfam C-JID domain 870 1012 IPR045344 -
Stsc60857g00006 1022 SUPERFAMILY "Winged helix" DNA-binding domain 418 502 IPR036390 -
Stsc60857g00006 1022 Gene3D Ribonuclease Inhibitor 506 709 IPR032675 -
Stsc60857g00006 1022 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 714 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60857g00006 Stsc-Chr60857 27998 34009 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60857g00006 3 785 WRKY Transcription Factor Family AT4G12020 33.039 7.69e-102 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60857g00006 - - ahf:112728390 1390.17