Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60857g00004 ATGGCGTCGTTGCTGTGGTTCTTGTTCTTCTTCTTCGTCTTATTATTACTATTACTGTTATCCTCCCTTCTTCGTCCTTCTTCCTCTTCTTCTTCTTCCTCTTCTACTGATGCTCCTATAATCAAATATGATGTGTTCATCAGTTTTAGAGGAGGAGACATCCGTGATAGTTTTCTAAGCCATTTGAAAAAAGAAATGCTTTCTAAGCAAATTGATTTCTTTGTTGACGATAAAAATGTTCATCCTGGGGATCAGATTTCACCCACACTTGTTCAAGCAATTGGGGAATCCTTTATTTCATTGGTCATCTTCTCGGAACACTATGCTTCTTCGAAATGGTGTATGGAGGAGCTTGTGAAGATTACTGAATGCATGAAGCAATATAAAAGGATTGTGATGCCTGTATTTTACCATGTTGAGCCTTATCAGGTAAGGCACCAGAAAGGAACTTTTGCAGAGGCTTTTGATGACCACAAAAGGAAGTATAAAGTAAAGGAAGCAAAGTTGCAGAAATGGAGATCCGTTTTAAAGGAGATTGCTAACATATCTGGAATTCATTATCCTTCTCCAAAATATGAAAAAGAAGCTGAGCTCATTGAAGAAATTATTAAATCTGTCAATGAGAAGTTGCCATCATCTATTTCTTCAAATGAATCCAAAGGTCTTGTTGGAATTGATGAACAAGTTAAGTCTATTGAATTGTTATTGGCAAAAATGGAGCCGAATGAAGTTGGAATCCTTGGAATTTGGGGTATGGGAGGTATAGGTAAAACAACCATCGCTCAAGTTATATTCACTAAATATTCCTCTCAATACCAAGGTTGTTGCTTCCTGAAAAATGTGAGAGAACAATCACAAACGCAGCGTGGCCTGGATGATTTGTGTGTGCAACTTGTTTCTCAACTCCTTGCGATGAAAAGTAGTAGAGTTATTGTAACTACTAGAGATGAGCAAATACTAATTGCTGCAGGAGTGCATCACATATACAAGGTCCAGGAATTGAGCTTTCAAAGTTCCCTTGAGCTTTTTTGCTTAAAAGCCTTTCACAAAAGCTATCCTGAAAATGGATATCAAGAGCTTTCAGACATGGCAATTTGGTATGCGAAAGGCCTTCCATTAGCCTTAAAAGTGCTGGGATCTTTTCTATGCTCAAGGAGTGCAGTAGCCTGGGAAAGTGCGCTAAGAAAACTTGAGACTCATCCTGATTCGAGCATTTTCAATGTGTTAAAGTTGAGTTACGATGGATTAGATGATTCAGAGAAGAACATATTCCTTGACATTGCATTCTTTTTCAAAGGAGAATACAAGGATAATGTCATAAGGTTTCTAGACTCTTGTGATTTCTTTGGAGCCATTGGAATAGACAACCTCCAACGTAAGGCTCTTATAACTATTTCACCAGAAGACACAATAGAAATGCATGACCTGATAGAGCAAATGGGTTTGGAAATTGTCTTCAAGGAATCAACTAAGGACGTCAAAAAGCGTAGTCGATTGAGGAATCCTGATGATGTCAGGAATTTATTGGAAAATAGTAAGGGAGAAAACTCAGTTGAAGGCATCATGTGTGACTTGTCTCAGATTGGAGATCTATGCTTAAATGCACACACCTTTAGAAATATGCCTCATCTAAGATTTCTTAAGCTTTATGCTCCTTGGGATGAAAAAGCGCCAAATGTGTATGTTCCCAAAACCCTGAAGCTGTTTTGTGCTAAACTCAGGTATTTGGAATGGAATAGGTATCCTCTGAATTCTCTACCATCAAGGTTTTGTACAGAGAAGCTTGTTGAGCTTAGGATGCCCAACAGTCAAATATCTAAACTCTGGGAGGGAACGCAGGATCTTCCCAATTTGACAAGCATTGACCTTGATGGATGTAAACAGTTGGTAGAGCTTCCAGATTTGAGTAAAGCAACAAAGCTTCAAACAATAAGCCTTAGGGATTGTGAAAAGCTATGTCAACTTCATCCATCTATTTTATCCCTCCAAACACTTGAGTATTTGGATCTTAGTTATTGCAAAGAAATGAAGAGTGTCAAAGGCAATTTGAAGTCTCTTAAATCACTTCGTGCTGATAAATGTTCAAGCTTGGAGGAATTTTCAATGTCAACAGAAGAACTGCAGTCTTTGTGTTTGCCTTTGAGTAGAATTAAGAGTCTGCAAAAGGAATTCTGTTGCTTTATATCTATTGAACATCTTAGTTTTCGTGATTGCAGAGAGCTAATTGAGCTGCCACACAACATGAAATTCCTATCAAGGTTGTGGATCCTTGAGGTAAGTGGTTGTTGTGGTCTTCGATCTATACCAGAGCTTCCACCATCTCTTCAAGAGCTTCTTGCTGATGACTGCACATCACTGGAAAGAGTATTCAGTTTGAAGGCAGTATTTAGTTTGAATAGGAGATGGATCTCATTTGTGAATTGCATGAGATTGGAAGAGGAGTCAGTGAATGATATTATGGAAGATGCCCATCTCACAATATTCAGAAATGTTTTCTTGTCGCCAGCAGAACGAGATTTCCATCAGTTTGGTAATGTTTTTTATCCAGGGAAGAAAGTTCCAGAGTGGTTCAGGTTTAGGACAGAAGAAGAAGCATCTGTAACAATTGAAGTAGAACAATGTAACAACCAGTTGTTGGGTTTCGTCTTCTGCTGTGTTGTTTCTCAAAACTTTGATGCATTGGGACATGTCTTCATCAGGTGTGAATACCGCCACTTGGGAGATTATATAAAGTACACATGTGTAAGAGAATGGTTACTATTTCATAGTAAAAGTAGATTGAACTCTGATCACGTTTTAATTTGGACTCATCCAGATTGTAACTCCGACGTATTGAGTGACATTGAAAGATGCAGAGACAGTGATGGCAGTGATGATCATGACTGCACTTGCAACCAAAATATCTCATTCAGATTCCGTGTTAATAGACCTAAGAAATGGGTGAGAGTGGAAGAAAGCGAAGAAGAAAAAGAAGAAGAAGAAGATTGTTTTATAAAAGGGTGTGGGGTTATTCCAGTGTATGCCTCAACTGTACTGGATGCCATTCAAAATATAGAATTGAAGTTCAACTTGAACCCTCTTCATAACTCCATCCCATTATGGATGGATCTGGACACATTGAAAAGTGACATGATCCGGAAGAGTAGAGGAAAATCAAAACCCTGGTGGTAA 3171 0.3844 MASLLWFLFFFFVLLLLLLLSSLLRPSSSSSSSSSTDAPIIKYDVFISFRGGDIRDSFLSHLKKEMLSKQIDFFVDDKNVHPGDQISPTLVQAIGESFISLVIFSEHYASSKWCMEELVKITECMKQYKRIVMPVFYHVEPYQVRHQKGTFAEAFDDHKRKYKVKEAKLQKWRSVLKEIANISGIHYPSPKYEKEAELIEEIIKSVNEKLPSSISSNESKGLVGIDEQVKSIELLLAKMEPNEVGILGIWGMGGIGKTTIAQVIFTKYSSQYQGCCFLKNVREQSQTQRGLDDLCVQLVSQLLAMKSSRVIVTTRDEQILIAAGVHHIYKVQELSFQSSLELFCLKAFHKSYPENGYQELSDMAIWYAKGLPLALKVLGSFLCSRSAVAWESALRKLETHPDSSIFNVLKLSYDGLDDSEKNIFLDIAFFFKGEYKDNVIRFLDSCDFFGAIGIDNLQRKALITISPEDTIEMHDLIEQMGLEIVFKESTKDVKKRSRLRNPDDVRNLLENSKGENSVEGIMCDLSQIGDLCLNAHTFRNMPHLRFLKLYAPWDEKAPNVYVPKTLKLFCAKLRYLEWNRYPLNSLPSRFCTEKLVELRMPNSQISKLWEGTQDLPNLTSIDLDGCKQLVELPDLSKATKLQTISLRDCEKLCQLHPSILSLQTLEYLDLSYCKEMKSVKGNLKSLKSLRADKCSSLEEFSMSTEELQSLCLPLSRIKSLQKEFCCFISIEHLSFRDCRELIELPHNMKFLSRLWILEVSGCCGLRSIPELPPSLQELLADDCTSLERVFSLKAVFSLNRRWISFVNCMRLEEESVNDIMEDAHLTIFRNVFLSPAERDFHQFGNVFYPGKKVPEWFRFRTEEEASVTIEVEQCNNQLLGFVFCCVVSQNFDALGHVFIRCEYRHLGDYIKYTCVREWLLFHSKSRLNSDHVLIWTHPDCNSDVLSDIERCRDSDGSDDHDCTCNQNISFRFRVNRPKKWVRVEESEEEKEEEEDCFIKGCGVIPVYASTVLDAIQNIELKFNLNPLHNSIPLWMDLDTLKSDMIRKSRGKSKPWW 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60857g00004 1056 Gene3D Ribonuclease Inhibitor 521 679 IPR032675 -
Stsc60857g00004 1056 Gene3D Ribonuclease Inhibitor 680 821 IPR032675 -
Stsc60857g00004 1056 ProSiteProfiles TIR domain profile. 41 210 IPR000157 GO:0007165
Stsc60857g00004 1056 SUPERFAMILY "Winged helix" DNA-binding domain 404 505 IPR036390 -
Stsc60857g00004 1056 Gene3D - 40 206 IPR035897 -
Stsc60857g00004 1056 SUPERFAMILY Toll/Interleukin receptor TIR domain 32 184 IPR035897 -
Stsc60857g00004 1056 PRINTS Disease resistance protein signature 246 261 - -
Stsc60857g00004 1056 PRINTS Disease resistance protein signature 660 676 - -
Stsc60857g00004 1056 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 306 701 IPR044974 GO:0006952
Stsc60857g00004 1056 FunFam Disease resistance protein (TIR-NBS-LRR class) 40 212 - -
Stsc60857g00004 1056 Pfam NB-ARC domain 232 271 IPR002182 GO:0043531
Stsc60857g00004 1056 Pfam NB-ARC domain 305 403 IPR002182 GO:0043531
Stsc60857g00004 1056 Gene3D - 207 307 IPR027417 -
Stsc60857g00004 1056 Pfam C-JID domain 848 1009 IPR045344 -
Stsc60857g00004 1056 SMART till_3 42 182 IPR000157 GO:0007165
Stsc60857g00004 1056 Pfam Leucine Rich Repeat 594 613 IPR011713 -
Stsc60857g00004 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 427 IPR027417 -
Stsc60857g00004 1056 Gene3D - 334 417 IPR042197 -
Stsc60857g00004 1056 Pfam TIR domain 42 225 IPR000157 GO:0007165
Stsc60857g00004 1056 SUPERFAMILY L domain-like 521 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60857g00004 Stsc-Chr60857 18475 42601 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60857g00004 33 770 WRKY Transcription Factor Family AT4G12020 30.113 2.06e-83 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60857g00004 - - ahf:112728390 1127.85