Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60850g00004 ATGAGAGTTTTCCTTCTTCTGCTGGTGTTGGTGCTGCTGCAACTTGTTGACCTCTCACATGGGCAAACAAAGAGCCAAGAGAACAACACAGGGTTTCAGTGCAGTGCCAGAGGAAGCTATCCATGTCAGGCTTATGCTTTCTACAGAGCACAAAGTGCTGAGTTTCTTGACCTGGCCTCCATAGGAGACCTCTTCCAAGTTAGCCGCCTCATGATCTCAAAACCAAGCAACATATCCTCTGGTTCTGTTTCCTCTCCTCTAACCCCAAACCAGCCCCTCTTCATTCCCTTAACATGCTCCTGCAACTCCATCAACTCCACCTTTGGTTCCATCTCCTATGCTAACATCTCCTACACCATCAAACCCAATGATACCTTCTTTCTGGTTTCCACCATTAAGTTTGAGAACCTCACTACCTACCCTTCTGTTGAGGTTGTCAACCCAAAACTCATAGTAACCAACCTCCAAATTGGGGACAATGCTATATTCCCTATCTTCTGCAAGTGCCCAGATAACAACACAACTGTGTCCAACACAAGGGCTAATTACATGATCTCCTATGTTGTCCAACCTTCTGATAACCTATCCTCCATTGCTTCAAGGTTTGGATCACAGGAGAAGGCCATAGCTTCTGTCAACAGCAACAAATTCAATGTCTATGACACCATATTCGTCCCCGTAACCCGGCTTCCAGTTCTTTCACAGCCAAACACAAGTGCTGGTGCTGCACCTTCTCCTACTCCTACTAGTACTGGTAGCTCTGATAACAGAACAGGCACTGTGAGAGGGTTGGCAATTGGATTGGGAATTGCTGGTTTGCTTCTGATTTTGGTGAGTGGGTTGTGGATTTATAGAGAGAGTTTGTTGAAGGACAGGATGTGGGCTGCAAGGGATGAGGAGGAGCAGAGGCAGAAGCAAGGCAGGTTGTTTTTGGGAGATGGGAAAGGAGGAGGGAAGCAGAAGATGGATGTGAAGCTGATGGCTAATGTTTCTGATTGCTTGGATAAGTATAGAGTGTTTGGAATTGAGGAACTGATTGAAGCCACTGATGGGTTCAGTGATAGTTGCCTCATTCAAGGTTCTGTGTACAAAGGTACTATTGATGGAGAAATCTATGCTATCAAGAAGATGAAGTGGAATGCCTATGAGGAGCTCAAGATCTTACAGAAGGTAAACCATGGGAATCTGGTGAAGTTAGAAGGGTTCTGCATAGACTCAGAAGAAGGAAACTGCTATCTAGTATATGAGTATGTAGAGAATGGATCTCTGTACACATGGCTGCATGAAGAGGATGGGAAGCATGAGAAGCTGAACTGGAAGACAAGGGTGAGAATAGGCATAGACATAGCCAATGGTCTTCAATACATCCATGAACACACAAGGCCAAGAGTAGTGCACAAAGACATCAAGAGCAGCAACATTCTCTTAGACTCAAACATGAGGGCTAAGATTGCCAACTTTGGCCTTGCCAAGTCAGGAATGAATGCCATAACAATGCACATTGTGGGAACTCAGGGCTACATTGCTCCCGAGTATCTAGCCGATGGCGTCGTCTCCACCAAGATGGATGTGTTTTCCTTTGGGGTTGTGCTACTCGAGCTCATATCCGGCCGGGAAGCCATCGACGAGGAGGGTAATCTGCTGTGGATGAGTGCTGTGAAGACCTTTGAAGAGGTGAGTAGTGATCAAGAGAAGGCTAAGAGGCTGAGGGAGTGGATGGACAAGACTATGTTGAGGGACACTGTGTCTATGGATAGTTTATTGGGAGTTTTGGGGATTGCTATTGCTTGTTTGCATAAGGAGCCTTCAAAGAGGCCTAGCATTGTGGATGTTGTCTATGCACTCTGCAAGAGTGACGATGCAGGCTTTGAAACCTCTGAGGAAGGTATTGGATCCCCTCGGGTTACGGCTAGGTGA 1917 0.4632 MRVFLLLLVLVLLQLVDLSHGQTKSQENNTGFQCSARGSYPCQAYAFYRAQSAEFLDLASIGDLFQVSRLMISKPSNISSGSVSSPLTPNQPLFIPLTCSCNSINSTFGSISYANISYTIKPNDTFFLVSTIKFENLTTYPSVEVVNPKLIVTNLQIGDNAIFPIFCKCPDNNTTVSNTRANYMISYVVQPSDNLSSIASRFGSQEKAIASVNSNKFNVYDTIFVPVTRLPVLSQPNTSAGAAPSPTPTSTGSSDNRTGTVRGLAIGLGIAGLLLILVSGLWIYRESLLKDRMWAARDEEEQRQKQGRLFLGDGKGGGKQKMDVKLMANVSDCLDKYRVFGIEELIEATDGFSDSCLIQGSVYKGTIDGEIYAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIDSEEGNCYLVYEYVENGSLYTWLHEEDGKHEKLNWKTRVRIGIDIANGLQYIHEHTRPRVVHKDIKSSNILLDSNMRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFSFGVVLLELISGREAIDEEGNLLWMSAVKTFEEVSSDQEKAKRLREWMDKTMLRDTVSMDSLLGVLGIAIACLHKEPSKRPSIVDVVYALCKSDDAGFETSEEGIGSPRVTAR 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60850g00004 638 MobiDBLite consensus disorder prediction 236 257 - -
Stsc60850g00004 638 Gene3D Transferase(Phosphotransferase) domain 1 418 628 - -
Stsc60850g00004 638 Pfam LysM domain 187 224 IPR018392 -
Stsc60850g00004 638 SMART LysM_2 186 226 IPR018392 -
Stsc60850g00004 638 Pfam Protein kinase domain 360 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60850g00004 638 Gene3D Phosphorylase Kinase; domain 1 322 417 - -
Stsc60850g00004 638 ProSiteProfiles LysM domain profile. 185 232 IPR018392 -
Stsc60850g00004 638 Gene3D LysM domain 171 234 IPR036779 -
Stsc60850g00004 638 CDD LysM 185 213 IPR018392 -
Stsc60850g00004 638 FunFam PTI1-like tyrosine-protein kinase 3 418 625 - -
Stsc60850g00004 638 SUPERFAMILY Protein kinase-like (PK-like) 337 615 IPR011009 -
Stsc60850g00004 638 ProSiteProfiles Protein kinase domain profile. 305 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60850g00004 638 SMART serkin_6 352 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60850g00004 638 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 6 617 - -
Stsc60850g00004 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60850g00004 Stsc-Chr60850 13488 16840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60850g00004 7 617 Receptor kinase-like Gene Family AT2G23770 31.562 1.07e-76 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc60850g00004 Pkinase 2.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60850g00004 - - lang:109352405 904.82