Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60849g00006 ATGGAAAACGAGATAGACGTTCCTCCCTTCTTTCTCTGCCCAATCTCGCTTGAAATCATGAGAGATCCCGTAACCGTCTCCACCGGCATCACCTACGACAGAGAGAGCATCGAGACGTGGCTCTTCTCCGGCAAGAACAAGACCTGCCCCGTCACAAAGCAACAACTCTCTTCTTCCGATTTCTCAGATCTAACTCCAAACCACACTCTTCGCCGATTGATTCAGTCCTGGTGTACAATCAACGCTTCCCACGGCATCGAAAGGATCCCCACTCCTAAACCACCAGTCAACAAAAACCAGATCTCCAAACTCCTCAAAGAAGCTTCGCGTTCCACCGCCCTCAACCAGATCAACTGTCTCAGAAAGCTCAAATCCATTGCTTCTGGAAGCGAAACAAACAAAAGGTGCATGGAAGCTGCTGGTGCCGTTGATTTCTTGGCTTCTCTTGTCAACAACAACATCGATTATCCTTCTTCCTCTCTACCATTACCTGAGGACGACGACGATGAAGCTTTGAAGAATAGTCCCTCGGATGAAGCCTTAAGCATGCTCTACAATCTTCACGTATCCGAAGCTGGATTGAAGAATCTCATAGGATTCAAGAACGGAGAGTTTGTGAATTCTTTAACGAGAATCTTGCAGAAAGGAACATACGAGTCAAGAGCTTACGCAGTTTTCTTGCTGAAATCAATGTTTGAGGTGGCTGAACCTGTTCACCTTCTTCACCTAGGAAGCGATTTATTCGTGGAGCTAGTGCAGGTTTTGAAGGACCAGATTTCTCACAAGGCAACAAAAGCCGCACTCCACGCTCTGATCCAGATCTCCCCGTGGGGGAGAAACAGGGTCAGAGCAGCGGAGGCCGGCGCAGTTGCCGTTCTCGTAGAGCTTCTTCTCGAAATCAAAGAGAGGAAGCCCTGCGAGATGATGCTAGTTTTGTTAGAGTTGCTTTGCCAGTGTGCGGAGGGAAGAGCGGAGCTATTGAACCATGGAGCGGGATTGGCCATTGTTTCCAAGAAGATTCTTAGGGTTTCGACGATGGGGAACGATAGGGCGGTGAAGATTCTTTTGTCGGTTGCGAAATTCTCCGCGACGGCGGTGGTTGTTCAGGAGATGCTGAAGCTTGGTGTGGTGGCGAAGCTGTGTTTGAGTCTTCAGGTGGATAGTGGAAGCAAGACGAAGGAGAAGGCGAGGGAGATTCTGAAGCTTCATGCTAAGGCATGGAAGAATTCTCCATGCATACCTACCAATTTGGCTTCTGCATACCCAGCTTTTGTTTGA 1278 0.4875 MENEIDVPPFFLCPISLEIMRDPVTVSTGITYDRESIETWLFSGKNKTCPVTKQQLSSSDFSDLTPNHTLRRLIQSWCTINASHGIERIPTPKPPVNKNQISKLLKEASRSTALNQINCLRKLKSIASGSETNKRCMEAAGAVDFLASLVNNNIDYPSSSLPLPEDDDDEALKNSPSDEALSMLYNLHVSEAGLKNLIGFKNGEFVNSLTRILQKGTYESRAYAVFLLKSMFEVAEPVHLLHLGSDLFVELVQVLKDQISHKATKAALHALIQISPWGRNRVRAAEAGAVAVLVELLLEIKERKPCEMMLVLLELLCQCAEGRAELLNHGAGLAIVSKKILRVSTMGNDRAVKILLSVAKFSATAVVVQEMLKLGVVAKLCLSLQVDSGSKTKEKAREILKLHAKAWKNSPCIPTNLASAYPAFV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60849g00006 425 FunFam RING-type E3 ubiquitin transferase 1 87 - -
Stsc60849g00006 425 Gene3D - 96 414 IPR011989 -
Stsc60849g00006 425 PANTHER WDSAM1 PROTEIN 4 414 IPR045185 GO:0061630
Stsc60849g00006 425 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Stsc60849g00006 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Stsc60849g00006 425 SUPERFAMILY RING/U-box 4 84 - -
Stsc60849g00006 425 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
Stsc60849g00006 425 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
Stsc60849g00006 425 CDD RING-Ubox_PUB 8 61 IPR045210 -
Stsc60849g00006 425 SUPERFAMILY ARM repeat 98 337 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60849g00006 Stsc-Chr60849 29956 31531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60849g00006 1 423 U-box Gene Family AT3G52450 56.689 2.66e-177 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60849g00006 - - aip:107624094 650.973