Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60849g00002 ATGTCGGTGAAGGAGTGCGGGCACCACAAGAGCAAGAAGAAGAAGATCTTCAAGAGGATCTTCTGGTGGACAGCCATAATCAGTTTCATCGTTCTCGTAACAGTACTCATAATATGGGCCATACTTCAACCATCAAAACCCACCTTCATCCTCCAAGACGTAACCGTCTACGCCTTCAACGCCTCCGTCGCCAACTTCCTCACCTCCAACTTCCAGGTCACCCTCTCCTCCCGCAATCCCAACGACAACATCGGAATCTACTACGACCGCCTCGACGTCTACATCTCCTACCAGAGCCAGCAGATCACCCTTCGAACTTCCATTCCTCCGTCGTACCAAGGCCACAAGGAGGTTGACATCTGGTCCCCGTTCGTCTCCGGCAACAATGTTCCAGTGGCTCCTTTCAACTACCAGGGACTAAGCCAGGACCAGAACAACGGCAACGTCCTCATCAACGTCAAGCTTGACGGCAAGGTCCGATGGAAGGTCGGTGCCTTTGTCTCCGGCCATTACCATATCTATATCCGGTGCCCTGCCTTCATCACTTTCGGTCCCAGCAGTAGCGGCATCAAACTCGGAGATAGCGGCGCCGTTAAGTATCAGCTTGTTCAGCGCTGCACCGTCGGTGTTTGA 633 0.5324 MSVKECGHHKSKKKKIFKRIFWWTAIISFIVLVTVLIIWAILQPSKPTFILQDVTVYAFNASVANFLTSNFQVTLSSRNPNDNIGIYYDRLDVYISYQSQQITLRTSIPPSYQGHKEVDIWSPFVSGNNVPVAPFNYQGLSQDQNNGNVLINVKLDGKVRWKVGAFVSGHYHIYIRCPAFITFGPSSSGIKLGDSGAVKYQLVQRCTVGV 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60849g00002 210 PANTHER OS05G0367900 PROTEIN 18 192 IPR044839 GO:0098542
Stsc60849g00002 210 Pfam Late embryogenesis abundant protein 74 173 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60849g00002 Stsc-Chr60849 4240 4872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60849g00002 49 188 SNARE and Associated Proteins AT1G32270 26.950 2.58e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60849g00002 - - gmx:100795832 335.495