Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60849g00001 ATGGCTGATAACAAGCAACCAAACTTGAACGGAGCCTACCATGGCCCCGCCATTCCCCCGGCAGAGCCACCACGCGGCTACCGCCACCAACGAAGCAGAAGCTGCTGCTGCTGCCTATTCAGCGTCATCTGGAAGCTTCTACTAGCTCTCATCATCCTCGCTGTGATTGCAGTCTTGGTATTCTGGGTGGTTGTTCAACCCCGCATATTCAAGTTCTACGTCAACAACGCAGAGATTACCCAAATGGACTATAACACCAACACCACCCAACTCCGCTACAACATGGTGCTCAACTTCACCGCCCACAACCCCAACAAGAAGCTCGGCATCTACTACGACAAGGTTCTAGCCAAAGCCTACTTCATGGACACGCAATTCGCCTCCGCTGACGTCATCACTTTCATGAACTCGTTCAGGCAAGACAAGAAGGGAACCAACCCTATGAGCGGTGTTTTCTCTGGACAACAATTGATTTTCCTTGATTATAGCCAGTACTCACAGATCACTGACGATAAGAATCGTAGGAATTTTGACATCTATGTCAAGCTCTACTTTGAAATGAGGTTCAGGCTTGGGGATCTGATTTCTGGCACCTACAAGCCCAAAGTGAAGTGTGATCTCAACGTTCCATTTCACAACGCCACCAAAGCTTTCACTTCTTTTAAGACTACCAAGTGTGATATTCATTTCTAG 693 0.4805 MADNKQPNLNGAYHGPAIPPAEPPRGYRHQRSRSCCCCLFSVIWKLLLALIILAVIAVLVFWVVVQPRIFKFYVNNAEITQMDYNTNTTQLRYNMVLNFTAHNPNKKLGIYYDKVLAKAYFMDTQFASADVITFMNSFRQDKKGTNPMSGVFSGQQLIFLDYSQYSQITDDKNRRNFDIYVKLYFEMRFRLGDLISGTYKPKVKCDLNVPFHNATKAFTSFKTTKCDIHF 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60849g00001 230 Pfam Late embryogenesis abundant protein 99 204 IPR004864 -
Stsc60849g00001 230 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 16 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60849g00001 Stsc-Chr60849 799 1491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60849g00001 64 211 SNARE and Associated Proteins AT1G32270 29.730 2.84e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60849g00001 - - gmx:100795302 291.582