Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60848g00004 ATGCAGAACCTTCTCTTCTTCTTCTTCTTCTTCTCATTGTTGTTCTCCTTCTGTAGTAGTGTTGCTGGTTCCAACAGCAGAAGAATCTTGCATGAACCCTTTGTACCATTGGAACCACACCCACCCACTGACCCACCAAAGCCACCACCATCTTCTAACACCACTACAAACCAAACCACACCCCAAAAACAAAACCCAAAGCACCCTTCCTCAACTGCAACAACCGCCACCTCAACCACTACAGCTACCCCTACCACCACAACTACAACCACAACAACAACCACACCATATGATTCACCATTTTTCCCAAACTACCCTTCACAGCCACCACCACCACCACAACCAACATTCACAGGCTTTGCTTCCTTCCCAGCTAACATTTCCTCCCTCATTCTTCCACATTCTCCAACTCCTACTCACTCCAATTCCAAGCTCCTTCCCGTTGCGCTTTCCGCCGTTGCGTGCGCTGTCGTCGCTGCCGCCGTCTCTGCATTTTTCTACCTTCGACGCCGTCGCCTGAACCGTGGCTCTGCAGAGAACAAGGATGTACGTCCAGAATGCAGTCGCCGGCGGGAAACCGCTGCAAAGCACCGGCAGTCTCCTACCGCCGCTGGCTCCGAGTTTCTCTACCTCGGCACTGTCGTCAATTCGCGCCGGATTGAAGGTGGCGGTAGCGGCAGCGGCGGCGGAGATGTCAGAGATAATAGACCTTCGTTGAGTCGGAAATTGGAGTCGCCGGAGCTCCGGCCACTTCCACCGCTAGTAAGGCAGATTTCGGCACCGCCGGTGGTGACGGCAGCGCAAGAGGAGGCGGAGAATGAGGAGGAAGAGGAGTCGGAGATGTTTTACTCGCCGAGAGGTTCGTCCTTAGGAGGACGCGAGAGCTCCGGCGGGACCGGATCGGGTTCCCGGCGAGCATTGTCGACAATCGCCGGTGAGAATTTCGGGGAATTGAGCTCATGTTCGGTTTCTTCCTCGAATTCCGGGTCCCCGGAGCGGTGTCACTCTATCTGCATCTCCCCGCCGGCACATCGTCCGCCGCCGCCACAGCAGCAAACCGTGACTTCGGTTTTGTCACCTACATTATCACCAATTCACAACCAACACGTTAGTTCTTCCGGTTCTTCTTCTTATTCTTCTTCGCTTTGTTCTTCAGCATGTGCAACACCAGAGAGAGGTTTTGTTGAAGATGAAGAAGAAGAAGAAGAAGAAGATACTAACAGTAATAGTAATGCTGTAAATGTTACTGAATCTCCTTTACTTTCGCCACTTTCATTGCCACCTAATAGAGATTCGGAGGAGAAAACCCTAACTGCAAATTTGGACTCATCATCATCATCACCACCAAAAGAGAGGGTTTCGGAAACACATGAAGCTGCATTACCAAGGAATTCTAATGTCTCCAATGGAAGTAGAAAGTCTTCATCATCAGCAGCATCACCAAGGGTTTCCAATGGAAGTAGAAAACCTTTGTCACGATCAACCTCGCTAGATAGGGTTTTGAAGGCTAGTGAAGTTGCATCATTGGCCTCATCTAGGATTTCTAGTTCCTCCATTGCAAGCAGAAAATCTAAATCATTATCACAAGAGAGGAATTTGGAGACAAATAAAGTTGCAACTGCATCTGCATTACCATTTGCTTCACCTCCAAGGCTATCTAATGTTTCTTCCAATGGAAGTACAAAGTTTGTGGCAACATCACCATCATCTTCAGCTTTCTCTCTGCCTTCATCTCCGGAGAAGGCGAGGAGTCATAACGGTTTTGATCAATCTCCAAGAATGTCCAGTGTCTCAGACCAGTTTAGGCAACCGGGTTTGTCTTCAGTGCCATTGTCACCATCACTGCTTTCATCACCAGAGACAGAAAGAGGGTTTAATTTCAGTGCCAGTTTCAATTCAAGTGAATCAGCAACACTTGCTAATGGTGCTTCACAGAGGAAGCATTGGGAGATCCCTGCATTGTCAACAACAACAACAAATCCATTCGGTCGATCAGGATCTATTGGTAGTGTTTTGGATCAAATCGTAGCTGTTCCGGTTACTCATCCACCACCTGTGCCTCCTCAGAGGAAACAATGGGCTATTCCTGGTATCTCAACACCACTTGCTCCACCGCCTCCGCCACCTCCTCCTCCACCTGCCACGACACAGCAGCAGCGGCAGCGGAAGCAGTGGGAGGTGCCATCTCCTACAACACCTGTTGGCCAATCTGTTTCGCGGCCTCCAGAGTTGAGACCTCCATCCAGGCCTTTTGTGTTGCAGAACACAACATTGGTTTCCCCTGTTGAGTTGCCCCCAAGTTCTCAGGGTTCAGTGGAAAATGAAGAGGCTGCCAAGCCAAAGTTGAAGCCTTTGCATTGGGACAAAGTAAGGGCAAGCTCTGATCGTGAAATGGTGTGGGATCAGTTGAAGACAAGCTCTTTCAAATTGAATGAGGAAATGATTGAAACACTGTTTGTAGCGAACATGCCAAACTCGAAACAAATGGACTCTACATCAGGCACAGTTCTTCCCCAATCAAGCCAGGAGGAGAAAGTACTTGATCCTAGAAAGTCCCAAAACATTGCAATCTTGCTGAGAGCACTTAATGTCACTATAGAAGAAGTGTGTGAAGCACTTTTAGAAGGTAGTGCTGATACACTTGGAGCAGAACTACTTGAAAGCTTGTTAAAGATGGCACCGAGTAAGGAAGAAGAGCGTAAATTGAAGGAATACAATGAGGACTCACCAAACAAGCTTGGTCCAGCTGAGAAATTCTTGAAGGCATTGCTGGATGTACCTTTTGCATTTAAAAGGGTGGAAGCAATGCTTTACATAGTCAATTTTGACTCTGAAGTCGAGTATCTTAGGAAATCTTTTCAAGCTCTAGAGGCTGCCTGCGAAGAGCTGCGAAGTAGTAGAATGTTCTTGAAGCTTCTTGAGGCTGTGCTTAAAACTGGGAACCGCATGAATGTGGGGACAAACCGTGGTGATGCCCAGGCCTTCAAACTTGACACACTTCTCAAGCTGGCCGATGTCAAAGGCGCAGATGGAAAAACTACATTACTACACTTCGTTGTACAAGAGATCATAAGAACTGAAGGTGCTCGACTCTCCAATACTAACCAAACCCTAAACTCTTCCTTGGCCGAAGATGTTGCATGCCGGAGGCTTGGCCTGCAAGTGGTATCTAGTCTGAGTTCAGAGCTAGCAAGTGTCAAGAAGGCTGCTACCATGGATTCTGAGGTTCTCAGCAATGATGCCTCTAAGCTCTCCAAAGGGATTGCAAACATTGCAGAGGTTGTACGATTGAATGAAAAAGCTGGATCAAATGAGAAGTTTACAGAATCAATGAACAAGTTCATTAGAATGGCTGAGGAAGAAATTCTGAAGATTCAAGCCCAAGAAAATGTTGCTTTGACCGTTGTGAAGGAAATCACAGAATATTTTCATGGTGACTTGGCAAAGGAAGAAGCTCATCCATTCAGAATCTTCATGGTTGTAAGAGACTTTCTTGCAGTTCTTGACCGTGTATGCAGAGAAGTTGGTATGATAAATGAGAGAACCATGGTTAGTTCAGCACATAGATTCCCTGTTCCAGTTAACCCAATGCTTCCACAACCAGTTAACCCTATGCTTCAGCATAGTGACTCTTCAGATGATGATACTCCATCATCTTAG 3660 0.4732 MQNLLFFFFFFSLLFSFCSSVAGSNSRRILHEPFVPLEPHPPTDPPKPPPSSNTTTNQTTPQKQNPKHPSSTATTATSTTTATPTTTTTTTTTTTPYDSPFFPNYPSQPPPPPQPTFTGFASFPANISSLILPHSPTPTHSNSKLLPVALSAVACAVVAAAVSAFFYLRRRRLNRGSAENKDVRPECSRRRETAAKHRQSPTAAGSEFLYLGTVVNSRRIEGGGSGSGGGDVRDNRPSLSRKLESPELRPLPPLVRQISAPPVVTAAQEEAENEEEEESEMFYSPRGSSLGGRESSGGTGSGSRRALSTIAGENFGELSSCSVSSSNSGSPERCHSICISPPAHRPPPPQQQTVTSVLSPTLSPIHNQHVSSSGSSSYSSSLCSSACATPERGFVEDEEEEEEEDTNSNSNAVNVTESPLLSPLSLPPNRDSEEKTLTANLDSSSSSPPKERVSETHEAALPRNSNVSNGSRKSSSSAASPRVSNGSRKPLSRSTSLDRVLKASEVASLASSRISSSSIASRKSKSLSQERNLETNKVATASALPFASPPRLSNVSSNGSTKFVATSPSSSAFSLPSSPEKARSHNGFDQSPRMSSVSDQFRQPGLSSVPLSPSLLSSPETERGFNFSASFNSSESATLANGASQRKHWEIPALSTTTTNPFGRSGSIGSVLDQIVAVPVTHPPPVPPQRKQWAIPGISTPLAPPPPPPPPPPATTQQQRQRKQWEVPSPTTPVGQSVSRPPELRPPSRPFVLQNTTLVSPVELPPSSQGSVENEEAAKPKLKPLHWDKVRASSDREMVWDQLKTSSFKLNEEMIETLFVANMPNSKQMDSTSGTVLPQSSQEEKVLDPRKSQNIAILLRALNVTIEEVCEALLEGSADTLGAELLESLLKMAPSKEEERKLKEYNEDSPNKLGPAEKFLKALLDVPFAFKRVEAMLYIVNFDSEVEYLRKSFQALEAACEELRSSRMFLKLLEAVLKTGNRMNVGTNRGDAQAFKLDTLLKLADVKGADGKTTLLHFVVQEIIRTEGARLSNTNQTLNSSLAEDVACRRLGLQVVSSLSSELASVKKAATMDSEVLSNDASKLSKGIANIAEVVRLNEKAGSNEKFTESMNKFIRMAEEEILKIQAQENVALTVVKEITEYFHGDLAKEEAHPFRIFMVVRDFLAVLDRVCREVGMINERTMVSSAHRFPVPVNPMLPQPVNPMLQHSDSSDDDTPSS 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60848g00004 1219 ProSiteProfiles Formin homology-2 (FH2) domain profile. 772 1194 IPR015425 -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 220 666 - -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 682 750 - -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 699 716 - -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 350 387 - -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 508 643 - -
Stsc60848g00004 1219 SUPERFAMILY Formin homology 2 domain (FH2 domain) 704 1180 - -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 650 666 - -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 825 845 - -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 1198 1219 - -
Stsc60848g00004 1219 PANTHER FORMIN-RELATED 419 1213 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Stsc60848g00004 1219 Pfam Formin Homology 2 Domain 775 1168 IPR015425 -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 289 334 - -
Stsc60848g00004 1219 SMART it6_source 772 1183 IPR015425 -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 53 101 - -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 761 780 - -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 717 738 - -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 102 118 - -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 35 52 - -
Stsc60848g00004 1219 Gene3D Formin, FH2 domain 770 1177 IPR042201 -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 177 203 - -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 34 121 - -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 459 501 - -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 1202 1219 - -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 408 450 - -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 177 197 - -
Stsc60848g00004 1219 MobiDBLite consensus disorder prediction 825 842 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60848g00004 Stsc-Chr60848 28954 34037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60848g00004 96 300 FH2 protein (formin) Gene Family AT3G25500 41.850 6.49e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60848g00004 - - ahf:112744322 1629.38