Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60848g00003 ATGCCATTGAGTTCAGAGACTGATAAGATTGCATTGCTTGCTTTGAAGGACAAGCTTACCAATGGTGACCATGATGCTCTACCATCATGGAATCACTCTCTACATTTCTGTGAATGGGAGGGCGTTACATGCAGTCGCCGTCGCAAGAGAGTGTCAGCCTTGCAACTTCAAAATCAATACTGGGGTGGTACTCTTACGTCATCTTTGGGAAATCTAACGTTCCTAAGGGTGATCAATCTTACCAACATCAACTTGCATGGTGAGATTCCAAGAGAAGTCGGTCATTTAAGGAGGCTGCAGATTCTTGACTTGAGGCAGAATAATCTTCGTGGTCAGATTCCTATGGAGATGATAAATTGTTCAAGACTTGAGGTAATTATATTACATTTTAATAATCTAACTGGTAAAGTTCCTTCGTGGTTTGGTTCTATGATGCAACTTACTCAACTCGGGCTCGCAGTCAACGGTTTTGTTGGTAGTATCCCAGCTTCTTTGGGAAATCTTTCATCGCTGGAGGACTTGTCACTTGCATACAATCATTTGGAAGGAACCATACCTCCAGCTTTGGGTAGGTTGTCAAAATTGACATTTTTGTCTTTAGGTTCAAATAATTTGTCTGGCTTAGTCCCCACGCCACTTTACAACCTTTCAAATATTCAACATCTTTCCCTTATAGAAAATCAGTTGGAGGGTACTCTCCTCTTGAACATACCAATGGCTTTTCCCAATCTTCAGAAACTTACTTGTGGAATGAACCGATTCACTGGTACTTTCCCATCTTCAATCTCCAACCTTTCCGAATTACAACAGTTTGATATAACCAAGAATGATTTTCATGGACCAATTTCTCCTAATTTAGGAAGTCTACTGAAACTTACGTATTTTAATGTTGGTCGTAACAGATTCGGAAGTGGAAGGGGTTACGATTTGGATTTCCTTTCCTCGTTACATAATTGTACTCAATTGCAAGTACTTGCCCTTGATAACAATTACTTAGGCGGTGTATTGACCGAAGATCTGGTAGGAAACTTATCAAGCAATCTCATTATGCTTACTATGGGGTTCAATCAAATATCTGGAAGGATACCTGATGGAATTGGAAAACTAATCAACCTTGCAGCACTTGGTATGGAGAAAAATTTCCTTCAAGGAACAATTCCATATTCAATTGGAAAGCTCAAGAATCTGGTACGGTTGACGTTAGGGGCAAATAAGTTGTTTGGCAACATTCCTCTTGTCATTGGTAACCTCACCATGTTGTCTGCTGTTGGTCTGGAGGCAAATAAATTTGAAGGATTCATTCCTTTTACACTTGGAAATTGCACCAAGATGGAGAGATTTTATGCTAATAATAACAACTTAAGTGGTAATATACCAAATCAATTATTTGGATACCAAAAAGGTTTAATAGAATTGACCCTATACTCCAACTCCTTTACTGGTCTCATTCCTTTTGATCTTGGTAACTTGAACCATCTTTCCATCTTGTATTTACAAGAAAATAAGTTGAGTGGTGAGATTCCCACAGAACTTAGTGGTTGTTCTGCTCTAAGGGAGCTTACACTAGAAAGAAACTCGTTCAATGGAAGTATACCTTCATTCTTAGGGTCTCTACTATCCCTTGAAACCTTAGACCTTTCTCATAACAACTTCTCAAACACAATCCCGCATGAACTTGTGAATCTCACGTTGTTGAATACTTTGAACTTATCTTTCAACAATCTCTCTGGTGAAGTCCCGGTAGGAGGAGTATTCAATAATATCACAACAATATCACTCACCGGAAACAAATATCTTTGTGGGGGGATACTTAAATTGAATCTCCCTCTATGTCCAAAGTTGCCCTCAAACAAACACAACATCTCTCATCATAAAAGAAAAATTATTCTCATCAGTGTGATTGGTGGGCTGTTGATCTTTGTTACGATTTTTTATAGTATCTATTGTCTTAAGAAGAAGTCCAAAAAGTTATCTTCTTCACCATCACTAGAACATAGATACTTGAAGGTTTCCTATGGAGAGCTGCATCAAGCAACAAATGGATTTTCTTCGTCCACTTTAATTGGCACAGGAAGCTCTGGCGCTGTATATAAAGGATCCCTTCCCCATTTTGAGAGTCCTGTTGCTGTGAAGGCCATAGTGTTCGAGTACATGCCTAATGGGAGTCTAGAAACCTTGTTGCACAACACTATTGAAGATGACGAATCCACAAATGCAAGTCTCAACCTTTTGCAAAGAGTAAATATTGCTCTTGATGTAGCTTTTGCATTGGATTATCTTCACAATGATTCTGGGGAGGAAGCAATAGTTCACTGTGATGTTAAGCCAAGTAATGTTTTGCTTGATGATGAAGTTGTTGCTCACTTGGGAGATTTTGGATTAGCTAGACTCATTAATGATGTCACAAGCCATTCTAGCAATAATCAAGCAAGCTCCTCTGCAATTAGGGGAACCATTGGATATATTCCACCAGAGTATGGAGGTGGTGGATCAGTGTCAAGAGAAGGAGACATGTATAGCTATGAAATTCTTCTTTTGGAGATGCTCACTGCTAAGAAGCCAACTGATAGAATGTTTGGGGAAGGTCTGAACCTTCGCAATTTCTGTAACATGGCAACGGCAGAAGGAATCATTGAGATTGTTGATTCAAGATTGCTCATTCCAATTGATGAACAAGATCAGGGAAGAAGGGTCATCACAAGGCAGCAAAATATGGAAGACACCATTCCAGAGTGTCTTGTGTCATTTGCTAGGATTGGAATTGCATGTTCTGAAGAATCTCCATCTCAACGAATGGGCATAAAAGATGTCATCATGGAGTTACATGCAATTAAACAGAACCTGCTTTCATGA 2853 0.3929 MPLSSETDKIALLALKDKLTNGDHDALPSWNHSLHFCEWEGVTCSRRRKRVSALQLQNQYWGGTLTSSLGNLTFLRVINLTNINLHGEIPREVGHLRRLQILDLRQNNLRGQIPMEMINCSRLEVIILHFNNLTGKVPSWFGSMMQLTQLGLAVNGFVGSIPASLGNLSSLEDLSLAYNHLEGTIPPALGRLSKLTFLSLGSNNLSGLVPTPLYNLSNIQHLSLIENQLEGTLLLNIPMAFPNLQKLTCGMNRFTGTFPSSISNLSELQQFDITKNDFHGPISPNLGSLLKLTYFNVGRNRFGSGRGYDLDFLSSLHNCTQLQVLALDNNYLGGVLTEDLVGNLSSNLIMLTMGFNQISGRIPDGIGKLINLAALGMEKNFLQGTIPYSIGKLKNLVRLTLGANKLFGNIPLVIGNLTMLSAVGLEANKFEGFIPFTLGNCTKMERFYANNNNLSGNIPNQLFGYQKGLIELTLYSNSFTGLIPFDLGNLNHLSILYLQENKLSGEIPTELSGCSALRELTLERNSFNGSIPSFLGSLLSLETLDLSHNNFSNTIPHELVNLTLLNTLNLSFNNLSGEVPVGGVFNNITTISLTGNKYLCGGILKLNLPLCPKLPSNKHNISHHKRKIILISVIGGLLIFVTIFYSIYCLKKKSKKLSSSPSLEHRYLKVSYGELHQATNGFSSSTLIGTGSSGAVYKGSLPHFESPVAVKAIVFEYMPNGSLETLLHNTIEDDESTNASLNLLQRVNIALDVAFALDYLHNDSGEEAIVHCDVKPSNVLLDDEVVAHLGDFGLARLINDVTSHSSNNQASSSAIRGTIGYIPPEYGGGGSVSREGDMYSYEILLLEMLTAKKPTDRMFGEGLNLRNFCNMATAEGIIEIVDSRLLIPIDEQDQGRRVITRQQNMEDTIPECLVSFARIGIACSEESPSQRMGIKDVIMELHAIKQNLLS 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60848g00003 950 FunFam LRR receptor-like serine/threonine-protein kinase EFR 308 617 - -
Stsc60848g00003 950 Gene3D Ribonuclease Inhibitor 236 307 IPR032675 -
Stsc60848g00003 950 ProSiteProfiles Protein kinase domain profile. 570 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60848g00003 950 ProSiteProfiles Leucine-rich repeat profile. 540 563 IPR001611 GO:0005515
Stsc60848g00003 950 SMART LRR_typ_2 562 587 IPR003591 -
Stsc60848g00003 950 SMART LRR_typ_2 168 192 IPR003591 -
Stsc60848g00003 950 SMART LRR_typ_2 490 514 IPR003591 -
Stsc60848g00003 950 SMART LRR_typ_2 538 561 IPR003591 -
Stsc60848g00003 950 SMART LRR_typ_2 96 120 IPR003591 -
Stsc60848g00003 950 SMART LRR_typ_2 393 417 IPR003591 -
Stsc60848g00003 950 PANTHER LEUCINE RICH REPEAT KINASE 2 314 713 - -
Stsc60848g00003 950 Pfam Protein kinase domain 713 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60848g00003 950 SUPERFAMILY L domain-like 5 302 - -
Stsc60848g00003 950 SUPERFAMILY L domain-like 345 601 - -
Stsc60848g00003 950 Gene3D Ribonuclease Inhibitor 308 610 IPR032675 -
Stsc60848g00003 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672|GO:0006468
Stsc60848g00003 950 Gene3D Ribonuclease Inhibitor 4 158 IPR032675 -
Stsc60848g00003 950 Gene3D Ribonuclease Inhibitor 159 235 IPR032675 -
Stsc60848g00003 950 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 718 950 - -
Stsc60848g00003 950 SUPERFAMILY Protein kinase-like (PK-like) 656 945 IPR011009 -
Stsc60848g00003 950 Gene3D Phosphorylase Kinase; domain 1 657 720 - -
Stsc60848g00003 950 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 45 306 - -
Stsc60848g00003 950 SMART serkin_6 682 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60848g00003 950 Pfam Leucine rich repeat 516 575 IPR001611 GO:0005515
Stsc60848g00003 950 Gene3D Transferase(Phosphotransferase) domain 1 721 949 - -
Stsc60848g00003 950 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524
Stsc60848g00003 950 Pfam Leucine rich repeat N-terminal domain 6 45 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60848g00003 Stsc-Chr60848 20993 24319 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60848g00003 3 949 Receptor kinase-like Gene Family AT3G47570 41.259 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc60848g00003 Pkinase 2.8e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60848g00003 - - ahf:112766919 1271.14