LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60848g00001	ATGGGCTTCAATGCATTTGAAGGAAGTCTTCCATTTACCTTGAGATATTGTACAGAGTTGCAGACATTCAGTATTCCTGCAAATAATTTGAGTGGAAACATACCTACTCAAGTCTTTGGCTACCAAGAAGGTTTGGTAAATCTTGACTTATCTGCCAACTCCTTTACTGGTTCAGTCTCTCCTGAATTTGGTAATTTGAAGCATCTTTCTACATTATATCTGTACGCAAATAAGTTTTCTGGTGTCATTCCTGTGGAACTTGGTGCGTCTTCTACATTAACAGAGCTTCGACTAGAAAGAAACTTCCTCCATGGGATTCTACCCCCATTCTTGGGATCTCTAAAATCTCTTCAAATATTAGACCTTTCTAACAATAACTTCTCAGGCACAATACCCCATCAACTTGAAAACCTGACCTTTCTGAGTTATTTGAACTTGTCCTATAACCATCTCTATGGTGAAGTCCCTCTAGGAGGAGTCTTTAGTAACAGCACAACAATCACACTCATAGGAAATAAGGATCTATGTGGTGGGGTACCTCAACTGAATCTCCCTTCATGTCAAAAGTTGTCCTCAAAGAGACACAAGAGCTCTCATAAAAAGGAAATTATTCTCATTAGTGTGATATGCGGGCTTTTGATCTCCTTTGTAATTTTTATTAGTATCTATTGTTGTCTCTTGAAAAAGCCCAAGAAGTTATCTTCTTCGCCATCACTAGAACATAGATACTTGAAGGTTTCCTATGGAGAGCTGCATCAAGCAACAAATGGATTTTCTTCGTCCAATCTAGTTGGGACAGGAAGCTTTGCCTCTGTGTATAGAGGAACCCTTGTCCATTTTGAGAGACCTGTTGCTGTCAAAGTGTTAAACCTTCAAACACGAGGAGCATCGAAGAGTTTCATGGCCGAATGCAAAGCTCTAGGAAAGATCAAGCATAGAAACCTTCTCAGCATACTTACTTGTTGTTCAAGTGTTGATTACAAAGGGAACGATTTCAAGGCCATAGTGTTCGAGTTCATGCCTAATGGGAGTCTAGAGATCTTGTTGCACAACACTGTTGAAGATAGCAAATCCTCAAATCGAAGTCTCAACTTTATTCAAAGAGTAAATATTGCTCTTGATGTGGCTTTTGCATTGGATTATCTTCACAATGATTCAGGAGAAGCTGTAGTTCATTGCGATATAAAGCCAAGTAATATTCTACTTGATGATGAAGTTGTTGCTCACTTGGGAGACTTTGGATTGGCTAGACTCATTCATGGTCCTGCAAGTCATTCTAGCAGTGGTCAAGCTAGCTCCTCTGCAATTAAGGGGACTATTGGATATATTCCACCGGAGTATGGAGCGGGTGGTTCTGTGTCAGCCGAAGGAGACATGTATAGCTATGGAATTCTTCTTTTGGAGATGCTGACTTCAAAGAAGCCAACTGATACCATGTTTGTTGAAGGTCTAAGCCTGCACAAGTTTTGCAAAATGGCAATTCCTGAAGGAATCACGGATATTGTTGATTCACAATTGCTAATTCCATTTGATGAAGGAGAAAGGAGAATCCCACAACAGCAAAATGTGGAAGACACCATTGGAGAGTGTCTTGTGTTGTTTGCTAGCATTGGAATTGCATGTTCTGAAGAATCTCCCTCTCAACGAATGGGCATAAAAGATGTGATTATGGAGTTACATGCAATTAAACAGAAGTTGCTTTCATAA	1707	0.3984	MGFNAFEGSLPFTLRYCTELQTFSIPANNLSGNIPTQVFGYQEGLVNLDLSANSFTGSVSPEFGNLKHLSTLYLYANKFSGVIPVELGASSTLTELRLERNFLHGILPPFLGSLKSLQILDLSNNNFSGTIPHQLENLTFLSYLNLSYNHLYGEVPLGGVFSNSTTITLIGNKDLCGGVPQLNLPSCQKLSSKRHKSSHKKEIILISVICGLLISFVIFISIYCCLLKKPKKLSSSPSLEHRYLKVSYGELHQATNGFSSSNLVGTGSFASVYRGTLVHFERPVAVKVLNLQTRGASKSFMAECKALGKIKHRNLLSILTCCSSVDYKGNDFKAIVFEFMPNGSLEILLHNTVEDSKSSNRSLNFIQRVNIALDVAFALDYLHNDSGEAVVHCDIKPSNILLDDEVVAHLGDFGLARLIHGPASHSSSGQASSSAIKGTIGYIPPEYGAGGSVSAEGDMYSYGILLLEMLTSKKPTDTMFVEGLSLHKFCKMAIPEGITDIVDSQLLIPFDEGERRIPQQQNVEDTIGECLVLFASIGIACSEESPSQRMGIKDVIMELHAIKQKLLS	568

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc60848g00001	568	Gene3D	Phosphorylase Kinase; domain 1	222	339	-	-
	Stsc60848g00001	568	Gene3D	Transferase(Phosphotransferase) domain 1	340	567	-	-
	Stsc60848g00001	568	SUPERFAMILY	Protein kinase-like (PK-like)	232	562	IPR011009	-
	Stsc60848g00001	568	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	340	568	-	-
	Stsc60848g00001	568	Pfam	Protein kinase domain	260	478	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc60848g00001	568	Gene3D	Ribonuclease Inhibitor	1	196	IPR032675	-
	Stsc60848g00001	568	ProSitePatterns	Protein kinases ATP-binding region signature.	264	287	IPR017441	GO:0005524
	Stsc60848g00001	568	PANTHER	OS04G0122200 PROTEIN	3	566	-	-
	Stsc60848g00001	568	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	1	83	-	-
	Stsc60848g00001	568	Pfam	Leucine rich repeat	92	151	IPR001611	GO:0005515
	Stsc60848g00001	568	SMART	serkin_6	258	567	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc60848g00001	568	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	390	402	IPR008271	GO:0004672\|GO:0006468
	Stsc60848g00001	568	PRINTS	Leucine-rich repeat signature	117	130	-	-
	Stsc60848g00001	568	PRINTS	Leucine-rich repeat signature	138	151	-	-
	Stsc60848g00001	568	SUPERFAMILY	L domain-like	2	177	-	-
	Stsc60848g00001	568	ProSiteProfiles	Protein kinase domain profile.	258	563	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc60848g00001	568	FunFam	LRR receptor-like serine/threonine-protein kinase EFR	229	339	-	-
	Stsc60848g00001	568	FunFam	Leucine-rich repeat receptor protein kinase EMS1	84	182	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60848g00001	Stsc-Chr60848	5062	7300	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60848g00001	4	565	Receptor kinase-like Gene Family	AT3G47570	45.439	1.29e-160	483

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Stsc60848g00001		Pkinase	1.2e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60848g00001	-		-	ahf:112766919	793.497