Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60847g00004 ATGGCTGAGAAACTTTATGGTGGAGCTTACCTCTCTTCCTTTGTTGATGCTATTTTGGACAACCTGTCTAAAATACTTGAAGATGACACTGTCTTTCATGGAAACCACTCTGCCATGGAGTTCCTTCCAAGGTTGGAAGAATGTCTGCTTGATGTTTCTCCTGTTCTTGATGATGCTGAGCTGAAGCAGTTCAGTGATAAGAGAGTCAAGAAGTGGCTTGTTGATCTCCAAGATGCTCTCTATTTCGCTGATGACTTGCTCGATGAACTCTCCACTAAAGCTGCCACTGCCACTGCCACTCAAACGGATCCAGGTATCTCTGCTTTATGTTCTCGTCTTGTTGATTCGTATATTGAAGATAGTGGTGACATGGAGAGAATAGTTGGAAGACTAGAGTCTGTTATAGCACGCAAAAAATTACTTCGTCTGAAGGAGACTGCCAAGGTGGACATGTCATGGAGGATTCCATCCACATCTCTAGTTGAACCATCGGAGATATGTGGCAGGAAAGAAGACAAGGAGGCCATACTGAAACTGTTGTTGGATGATGCTGATGCTGGTGATGCTGATTTATCTGTGATTCCCATTGTTGGCATGGGTGGGATAGGAAAGACCACTTTGGCTCAATTGGTTTACCACCACGACAAAGTGAAGGAGATGTTTGATTTTCGAGGGTGGGTTTGTGTCTCTGAAGAGTTTGATGTTGTCAAGGTCACGAAGACTATAATCGAGGCAATAACTTCGAGTTTCTGTAACTTGACTGATTTGAATTTACTTCAACATGATCTAAAGGAAAAGTTGTCCAGGAAAAAGTTCTTTGTTGTCTTGGACGATGTATGGAATGAAAGTTATGATGATTGGAATATGCTTCTAAAACCTTTTCAAAAAGGGGTTAAGGGAAGTAAAATTCTCATAACCACTAGAAGTAAAAAAGTGGCTTCTGTGGTGGAAACTGTTTCACCTCATGAACTGAGGTCATTGTCTGATGAAGATTGTTGGTTGGTGTTTTCAAAACATGCACGTCTTTCAACTGCTTCCATGGAGAATCCAACCCTGATAAAAATCGGCAAAGATATCATAAAGAAGTGCGATGGATTGCCATTGGCAGCTCAAGCCCTTGGAGGTCTATTACGTGGAAATTCTGATGTCAAGTACTGGAATCATTTGCTGAAGAGTGAGATATGGGGACTCTCCGATGATGGAATAAAGGGAATTAATGTTGTTCCAGCGTTAAAAATAAGTTATTATTTTCTGCCATCATATTTGAAGCAATGCTTTGTTTATTGTTCCTTGTATCCCAAGGACTATGAATTTAGCAAAGATGAATTGATATTGCTATGGATGGCAGAGAATTTTTTGCAACCAGTTGGAAAAAAGACTTTGGAAGAAGTTGGTGATGAGTATTTTGATGAATTACTTGCGAGATCATTTTTCCAACCTCACAGTACTCGTGAAAAGATATTTGTGATGCATGATCTCGTGCATGATTTGGCAATGATCTTTGCTGGAGAATTCTATTATCGAGCTGAAGATCTTGAGAAGGTTGATGAGGTTGATAGTAAAACTCGTCATTTGTCACATAATCCCAAAGGCAATTATTCAATGTCAAAACTTTTGGGAGTCTGTGACAGAGTGAAAAATACAAGGACATTTCTTGACATCAATCTACACCATTGGATTCCATTCAACATGCAAAATGCACCATGTATCTTCTTGTCAAAGTTGCTAAACCTGAGAGCTTTGTCGTTCAAATCCTTTCCTCTTGAGTTACTGCCGGATTCAATAAGTGGACTGATTCATCTGCGCTACTTGGATCTGTCTCATACCTACATCGTGGCATTGCCAGAGTCATTGGGTGAGCTATACAATTTGCAGACCTTGAAGCTGTTTGGATGCCGGAAATTAAAAATGCTTCCAGTTGGCATGAAAAATCTTATAAATTTACGCCATCTTGACATCACAAGCTCTGATTTGCATGAGATGCCGAAAGGCATGAATGAATTGAAAAAGATACAGTTTTTGAGTGACTATGTTGTGGGGAAGCATGAAGAGAATAAGATTAAAGAATTGGGAGCACTTGCAGATCTACACAAATCAATTCACATTTCGAAATTGGAGAATATGGTCACTAGCAGCGAAGCTTTGGATGCAAGAATGTGTGATAAGGATGGCATTGATTCAATAAGGTTGAGTTGGTCATGGAATGAAGACGAGAAGATAGTTGATTCTGAATTAGAAGAAGATATTCTGGACAAGTTACGACCTCATAAAAATTTGAAAGAACTAGAAATCAGTGGTTACAGGGGTACACGATTTCAAGATTGGTTGGGAAGTTCTTCCTACCACAACATCACCACACTAAATTTAAGAGGTTGCAGGAATTGTTGTATGCTTCCTTCACTTGGACAATTGCCCTCTTTGAAGGACCTCACGATTTTTGCTTTTGAAAGGCTTGAGATTGTGGGTGCTGAGTTTTATCAGAAGGATGGCTGTTGTTTGGAGATACCATTTCCAATGCTTGAAACTCTTCGGTTTGAGTTTATGCGTTGCTGGAAGGAATGGCATACAATGGAGTTGAATGCATTTCCTCGACTTAGGGAGCTTGTCATATGGGAGTGTCCCATGTTGAGAGGAGATCTTCCAAATCATCTACCATCTTTGCAATCACTTGTGATTCATAATTGCGAGCAGCTCAGTTATTGTGTTCCAAGAGCTCTTGCGATGACGTCTTTAAGAATAAGTGGTAGCAATAAAGTGAGTATTGGGGAGCTACCTCCTTTATTGCGTGATCTATCAGTTGATGGAAACCATCAAGTGGAGTATGTGTTAGAGACCATTACCAACAGGCATCTGAGTTGCCTCACGTCTTTATCCATCTCAGGTTGTTCCTCCCACATATCGTTTCCAGTGAGTTATATTCCCGCATCACTACAAAATTTGAAGATAATGAAGTGCAGAAAATTACAAGTCCAAATGGATGGGCAACATCACTCGCTGCAGATGCTGGAAATATGGGACAGCTGTGATTCAGATACGTCCTTCTCGTTGTTGGATTCCTTTCCTAATCTCGTGCGTCTTCAAATCCTTTTCTGTGATAAGATGGAGTGTATTGTGGTGTCGCGATCTCTTTCATGTCTCCGTTATTTATCTATCGAGTGCTGTTTGAGTTTGAAATCCATGTCGACGTTATGGATGGCAGCACCTCAGCTAGAAGATCTCAGAATAGAGGGTTGCACAGAGATGGATTTGTCAGCTACAGGGGACCCACACTGTAGCCTCAGATCTCTTAACATCTCCTACTGCGAGAAACTGGCCCACTCTGCAGCATTTATGAATTCACAATTTCATGGGCTTACTGATCTTTCGATTGAAGGTGGATGGATTGATGATGAATACGACGAGATTGTGCTATCTTTCCCAAAGGAAGGTTGGTTGCCTGGATCACTTGAGTCTCTCTCACTGTATGAAATGAAAACTGTGGAGACGTTGGAATGCAAGGGACTTGCCCACCTCACCTCCCTCCAACGATTATCTATAGATGATTGTCCCAAGTTGGAGAATATTGATGGAGAAATGCTACCTGCCTCTCTAATACGACTCGCTATCTGTGGAACCCCTTTGCTAGGTGAACGGTGCCAAATGAAAGACCCACAAATTTGGCCCAAAATTTCCCACATCAGCGGCATTCAAGTTGATGGCAGTTGGATTTGGTAA 3714 0.4114 MAEKLYGGAYLSSFVDAILDNLSKILEDDTVFHGNHSAMEFLPRLEECLLDVSPVLDDAELKQFSDKRVKKWLVDLQDALYFADDLLDELSTKAATATATQTDPGISALCSRLVDSYIEDSGDMERIVGRLESVIARKKLLRLKETAKVDMSWRIPSTSLVEPSEICGRKEDKEAILKLLLDDADAGDADLSVIPIVGMGGIGKTTLAQLVYHHDKVKEMFDFRGWVCVSEEFDVVKVTKTIIEAITSSFCNLTDLNLLQHDLKEKLSRKKFFVVLDDVWNESYDDWNMLLKPFQKGVKGSKILITTRSKKVASVVETVSPHELRSLSDEDCWLVFSKHARLSTASMENPTLIKIGKDIIKKCDGLPLAAQALGGLLRGNSDVKYWNHLLKSEIWGLSDDGIKGINVVPALKISYYFLPSYLKQCFVYCSLYPKDYEFSKDELILLWMAENFLQPVGKKTLEEVGDEYFDELLARSFFQPHSTREKIFVMHDLVHDLAMIFAGEFYYRAEDLEKVDEVDSKTRHLSHNPKGNYSMSKLLGVCDRVKNTRTFLDINLHHWIPFNMQNAPCIFLSKLLNLRALSFKSFPLELLPDSISGLIHLRYLDLSHTYIVALPESLGELYNLQTLKLFGCRKLKMLPVGMKNLINLRHLDITSSDLHEMPKGMNELKKIQFLSDYVVGKHEENKIKELGALADLHKSIHISKLENMVTSSEALDARMCDKDGIDSIRLSWSWNEDEKIVDSELEEDILDKLRPHKNLKELEISGYRGTRFQDWLGSSSYHNITTLNLRGCRNCCMLPSLGQLPSLKDLTIFAFERLEIVGAEFYQKDGCCLEIPFPMLETLRFEFMRCWKEWHTMELNAFPRLRELVIWECPMLRGDLPNHLPSLQSLVIHNCEQLSYCVPRALAMTSLRISGSNKVSIGELPPLLRDLSVDGNHQVEYVLETITNRHLSCLTSLSISGCSSHISFPVSYIPASLQNLKIMKCRKLQVQMDGQHHSLQMLEIWDSCDSDTSFSLLDSFPNLVRLQILFCDKMECIVVSRSLSCLRYLSIECCLSLKSMSTLWMAAPQLEDLRIEGCTEMDLSATGDPHCSLRSLNISYCEKLAHSAAFMNSQFHGLTDLSIEGGWIDDEYDEIVLSFPKEGWLPGSLESLSLYEMKTVETLECKGLAHLTSLQRLSIDDCPKLENIDGEMLPASLIRLAICGTPLLGERCQMKDPQIWPKISHISGIQVDGSWIW 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60847g00004 1237 Pfam Rx N-terminal domain 14 97 IPR041118 -
Stsc60847g00004 1237 Gene3D Ribonuclease Inhibitor 908 1084 IPR032675 -
Stsc60847g00004 1237 Gene3D Ribonuclease Inhibitor 542 722 IPR032675 -
Stsc60847g00004 1237 Gene3D Ribonuclease Inhibitor 1085 1213 IPR032675 -
Stsc60847g00004 1237 Pfam NB-ARC domain 170 391 IPR002182 GO:0043531
Stsc60847g00004 1237 Gene3D Ribonuclease Inhibitor 727 907 IPR032675 -
Stsc60847g00004 1237 Gene3D - 326 413 IPR042197 -
Stsc60847g00004 1237 PANTHER DISEASE RESISTANCE PROTEIN RP 51 878 IPR044974 GO:0006952
Stsc60847g00004 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 429 IPR027417 -
Stsc60847g00004 1237 FunFam Probable disease resistance protein At1g63360 415 500 - -
Stsc60847g00004 1237 Gene3D - 15 120 - -
Stsc60847g00004 1237 FunFam Probable disease resistance protein At1g61300 153 320 - -
Stsc60847g00004 1237 SUPERFAMILY L domain-like 489 912 - -
Stsc60847g00004 1237 Gene3D - 150 320 IPR027417 -
Stsc60847g00004 1237 Gene3D - 414 499 IPR036388 -
Stsc60847g00004 1237 PRINTS Disease resistance protein signature 193 208 - -
Stsc60847g00004 1237 PRINTS Disease resistance protein signature 882 898 - -
Stsc60847g00004 1237 PRINTS Disease resistance protein signature 363 377 - -
Stsc60847g00004 1237 PRINTS Disease resistance protein signature 266 280 - -
Stsc60847g00004 1237 SUPERFAMILY L domain-like 838 1102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60847g00004 Stsc-Chr60847 33126 36839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60847g00004 190 654 WRKY Transcription Factor Family AT5G45050 23.168 3.39e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60847g00004 - - aip:107626318 1757.27