Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60839g00006 ATGTCCAGAGAAAGGGAGAGATCCGTTGATGATGAGATAGGGAAGAAGATCAAGAGGGAAGGAGATGATCAAAAGGGAAGGAGACAACAACACATGTTAGGAAGTCAACAACAACATCCTCATAATCAAGGAACCCTAAATACAATCACCCCTTGTGCAGCATGCAAGCTCTTGAGAAGAAGATGTGCTCAAGAATGTCCCTTTTCTCCTTATTTCTCTCCCCATGAGCCCCAAAAGTTTGCATCTGTTCACAAAGTCTTTGGTGCCAGCAATGTCTCAAAGTTGCTAATGGAAGTGCCTGAGAATCAAAGAGCTGATGCTGCAAATAGTCTAGTTTATGAGGCAAATGTGAGGCTAAAAGATCCGGTTTATGGATGCATGGGTGCAATATCTTCTTTGCAACAACAAGTCCAATACCTAGTTACTGAACTCAATGCTGTGAGGGATGAAATACTCAAATACAAACTTAGGGAAGTTAATGCCGCCATGATCCCCTCATCTTCTCATCATGTAATTCTTCCTTCATCATCATCAGAAGTTGTTTCTATCGCCGTTCCGCCGCCGCTGCCGCCTACAAGTACCTCTTCAACTACCTCTTCTTCCATGATTTATCCCCAACAGACTGATCCTTCAAATTATGGGACAATTTCAAGTGATAATGTTCCCTATTTTGGTTGA 678 0.4248 MSRERERSVDDEIGKKIKREGDDQKGRRQQHMLGSQQQHPHNQGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLMEVPENQRADAANSLVYEANVRLKDPVYGCMGAISSLQQQVQYLVTELNAVRDEILKYKLREVNAAMIPSSSHHVILPSSSSEVVSIAVPPPLPPTSTSSTTSSSMIYPQQTDPSNYGTISSDNVPYFG 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60839g00006 225 MobiDBLite consensus disorder prediction 185 218 - -
Stsc60839g00006 225 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 47 186 - -
Stsc60839g00006 225 Pfam Lateral organ boundaries (LOB) domain 51 147 IPR004883 -
Stsc60839g00006 225 MobiDBLite consensus disorder prediction 1 29 - -
Stsc60839g00006 225 Coils Coil 130 150 - -
Stsc60839g00006 225 ProSiteProfiles LOB domain profile. 50 151 IPR004883 -
Stsc60839g00006 225 MobiDBLite consensus disorder prediction 30 46 - -
Stsc60839g00006 225 MobiDBLite consensus disorder prediction 194 218 - -
Stsc60839g00006 225 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60839g00006 Stsc-Chr60839 34277 35952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60839g00006 44 225 AS2 family AT2G40470 69.149 1.11e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc60839g00006 LOB 2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60839g00006 - - ccaj:109797870 281.952