Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60839g00001 ATGGTTTCAAGAGAGCAAAAGAGAGAAGCACTTTTGCATGAGAAGCTCCAACTCCTTCGTTCTATTACTAACTCTCATGCTGTGAACAAAACCTCGATCATAATCGATGCATCAAAGTATATTGAAGAGCTTAAAGAGAAGGTAGAGAGACTCAATCAAGAGATAGCCTCAGCAGAAACTTCAAATCATCCTAATTTGCCTATGGTTACAGTAGAAACCCTAGAAAAGGGATTTATGATAAATGTATTTTCAGGAAGAAGTTGCCATCATCAAGGATTACTTGTTTCAATTCTTGAAGCCTTTGAAGAGATGGGTCTCACTGTTCTTGAAGCTAGGGTTTCTTGTACGGACACTTTTCGCTTCCAAGCTGTTGGAGGAGGAGAAAATGATGAACAAGGTGAGACAATTGATGCACAAGCTGTGAAACAAGCAGTGGGACAAGCAATAAAGAATTGGAGCCAACAAAGTGATGATCAAGATTAA 483 0.3913 MVSREQKREALLHEKLQLLRSITNSHAVNKTSIIIDASKYIEELKEKVERLNQEIASAETSNHPNLPMVTVETLEKGFMINVFSGRSCHHQGLLVSILEAFEEMGLTVLEARVSCTDTFRFQAVGGGENDEQGETIDAQAVKQAVGQAIKNWSQQSDDQD 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60839g00001 160 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 67 IPR036638 GO:0046983
Stsc60839g00001 160 Coils Coil 34 61 - -
Stsc60839g00001 160 CDD ACT_UUR-ACR-like 90 149 - -
Stsc60839g00001 160 Gene3D - 2 72 IPR036638 GO:0046983
Stsc60839g00001 160 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60839g00001 Stsc-Chr60839 6868 8502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60839g00001 12 145 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 28.472 9.74e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60839g00001 - - adu:107469282 241.891