Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60838g00006 ATGGGTTTGGGAAATTTGAACAACAATGAGATATGGAACGCTCATGGTGCCATGGCCATGGTTCAGGTCTTCGNNNNNNNNNNCCTCAACGTTGGCGTCAACCAGATCGTCTTCTGCGTCTTCCGCGATCTCCTCGCTCTCTCCATCCTCGCCCCTCTCGCCTTCTTTCGTGAAAAACGCACTCGACCTCCCATGACCAAGCACCTCTTGTTGTCCTTCTTCTTTCTTGGATTAACCGGGATATTTGGCAACCATCTTTTGTTTCTTATTGGTTTAAGCTATACTAATCCAACTTATGCTGCTGCAATACAGCCAGCCACTCCTGTCTTTACATTTCTATTTGCAGTTATGATGGGTACAGAAAGAGTGAACCTTTTAAGATATGAGGGTTTGGCCAAGCTTGGTGGAACTCTTGTCTGTGTTTTTGGTGCTATATTGATGGTTTTGTATCGCGGTCCGGCCGTAGTCGGATATGCTGAAATGGACTTTGTTTCACATAATGAAATCAGTGCTAAAGGTCAACCAGAGCCTTCTGGTTGGTTGGTTTCTGGTTTAATGGATCTTGGACTCGACCATTTTCATCTTGGGGTTCTCTGTTTCATAGGGAACACCTTGTGCATGGCTGCTTTTCTTGCCATTCAGGCGCCAATACTAAAAAAGTACCCTGCCAACCTATCTGTCATTGCATTTTCATACTTCTTCGGAGCTCTACTAATGGTGATCACATCTATGTTTGTGAGTAATGAGGCAACCGACTGGATTTTGACGCGGTCTGAGACACTTGCTGTTATTTATGCTGGTGTTATTGCATCGGCCCTTAACTATGGACTGATTACATGGTGCAACAAGATCTTGGGGCCAGCAATGGTTGCCCTTTATAATCCACTTCAACCTGGTGCTTCTGCTCTCTTGTCTAGAATTTTCCTTGGGAGTCCAATTTATATGGGAAGCATTCTTGGAGGTTCTTTGATTATTGCTGGTTTGTATGCTGTTACATGGGCATCATTTAGAGAAAGACAAGCATCAAGTGGAGTTCTTCCTAATCATCATCATCATCATGGATCTTGGGTCTCTGATGACAAGAGTTCATATCAGAGAGGTCTCATGCTCCCCAGCTTAACCCCAAAGCCTTCTGATTAA 1140 0.4395 MGLGNLNNNEIWNAHGAMAMVQVFXXXXLNVGVNQIVFCVFRDLLALSILAPLAFFREKRTRPPMTKHLLLSFFFLGLTGIFGNHLLFLIGLSYTNPTYAAAIQPATPVFTFLFAVMMGTERVNLLRYEGLAKLGGTLVCVFGAILMVLYRGPAVVGYAEMDFVSHNEISAKGQPEPSGWLVSGLMDLGLDHFHLGVLCFIGNTLCMAAFLAIQAPILKKYPANLSVIAFSYFFGALLMVITSMFVSNEATDWILTRSETLAVIYAGVIASALNYGLITWCNKILGPAMVALYNPLQPGASALLSRIFLGSPIYMGSILGGSLIIAGLYAVTWASFRERQASSGVLPNHHHHHGSWVSDDKSSYQRGLMLPSLTPKPSD 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60838g00006 379 PANTHER WAT1-RELATED PROTEIN 18 339 IPR030184 GO:0016020|GO:0022857
Stsc60838g00006 379 SUPERFAMILY Multidrug resistance efflux transporter EmrE 42 150 - -
Stsc60838g00006 379 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 338 - -
Stsc60838g00006 379 Pfam EamA-like transporter family 33 131 IPR000620 GO:0016020
Stsc60838g00006 379 Pfam EamA-like transporter family 195 332 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60838g00006 Stsc-Chr60838 29330 32029 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60838g00006 90 343 Nodulin-like Gene Family AT5G45370 66.535 4.78e-120 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60838g00006 - - gmx:100809051 586.645