Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60838g00001 ATGTTTGTGCAATTGTCTTATGTTCAGTTGCAGCATGATTATATTTTGGGCAATTATCCTATTGGAAAGGATGATGCTGCCCAGCTTTCTGCATTACAAATCTTGGCTGAGGTTGGATATCTTGGCTCACCTGAGGCATGCACTGACTGGAACTCACTTTTGGAGCGATTCCTTCCTCGACAAATTGCAATGACACGAGCTAAACGGGAATGGGAGATGGACATTCTTTCTCGTTATCATTCGTTGGAGCATCTGAACAAAGATGATGCAAGACAACAATTTCTACGTATATTGAGAGCACTTCCTTATGGGAATTCTGTTTTCTTCAATGTTCGCAAGATCGATGATCCTATTGGACTCCTCCCTGGACGAATAATATTAGGAATTAACAAAAGAGGGATTCACTTTTTCCGTCCAGTTCCAAAGGAATATTTGCACTCAGCTGAGTTGAGAGACATAATGCAATTTGGAAGCAGCAACACGGCAGTATTTTTTAAAATGCGAGTTGCTGGTGTTCTTCACATATTCCAGTTTGAAACCAAGCAGGGGGAAGAGATTTGTGTAGCACTTCAAACACATATAAATGATGTAATGCTGCGCCGCTATTCAAAAGCACGATCTGCTGCTACTGGTTCTTTGAATGGAGATATTTCTAATAATTTTAAGCCTCCTAACTTGGAGCTGTATGAGAAGCGTGTTAAAGACTTGTCAAAGCTTGCTGAAGAATCTCAAAAAAATGTCGATCAATTGTTTCAAGAATTGCGTGAAAAGCAAAAACAAGAAGAGATAATGAAAGAAGAACTGGAGAGCCTGAAAGAATCCTTAAATGCTGATCGGAAAAATCTCGAGGAAGTTTCAAATGATCGGGATAGGCTTAAATCATTATGCAGTGAAAAAGATAAGGCACTTCAGGCTGCAATTCTTGAGAAAAAGAACATGGAAGCAAAGATGACTAAATTGAATAATCTAGTAATAGAGAATGCTGCAAAAAAGGAACTCATTGGAACAAATAACCAAGTCTCTCAAAAGCTTGAAAGTGAACTTAAACTTTGTAAAGAGGAGTTGCAAGCTGCTGAAGAAACTATCAAAAGCTTAACAGATGAAAAACTGATTTTGGAAGAGAAACTATCTGTGCTCGAGAAGAGAAGTACTGAAGAGATTACTTCTCTTCAACGGAAACTTGAGCAAGAACGCAAACTCGTAAAGTCTCAAGTTTATGAGCTAGAAAAGAAGCTAGAGACTGTTAGACAAGAATTAGTGGTAGCAAAGTCTAATATTTCAGTAAAGGATTCTGAGTTGGCTGCTTTGCAAAATAACTTGAAGGAATTAGAAGAGTTGAGAGAAATGAAAGAGGACATTGATAGAAAGAACGAGCAAACAGCTGCCATATTGAAGATGCAAGGGGCTCAACTAGTTGAAATGGAGGCACTTTATAAGGAAGAACAAGTTTTAAGAAAACGTTATTATAATACAATAGAAGATATGAAAGGCAAGATTAGAGTTTACTGTCGACTAAGACCTCTTAGCGAAAAGGAGATTGCCGAGAAAGAAAGACAAGCGCTTGCTGTGGTGGACGAGTTTTCAGTCGAACATATGTGGAAAGAAGATAAGCCGAAGCAGTACGTATATGATCGTGTGTTTGATGGTGGTGCAAGTCAAGAAAGTGTATTTGAGGATACAAAGTATTTGGTACAATCTGCTGTGGATGGATATAATGTCTGCATATTTGCTTATGGTCAAACCGGTTCTGGAAAGACATTTACAATCTATGGAAGTGAAAACAATCCCGGACTGACTCCTCGTGCCACAGCTGAACTTTTTAGAATTTTAAAGAGAGATAATAGCAAATATGCTTTTTCCTTAAAGGGTATGGTGGCTGTGGAAAATGTAACAGTTTTGCCAATCTCCAAAATAGAAGATTTGAATAATATAATACAAAGAGGATCCGAGCGGCGGCATACATCTGGGACACAAATGAACGAAGAAAGTTCAAGATCTCATCTCATTCTTTCAGTTGTCATTGAGAGCACCAACCTTCAAAGTCAAGCAGTTGCAAGGGGAAAGTTGAGTTTTGTAGATCTTGCCGGTTCAGAAAGAGTGAAGAAGTCCGGTTCCGTAGGTAGCCAACTCAAGGAAGCTCAAAGCATTAATAAATCGTTGTCGGCACTTGGAGATGTGATTAGTGCTTTGTCTAATGGTGGTCAACACATTCCTTATAGGAATCACAAACTAACTATGTTAATGAGTGATTCCCTTGGTGGTAATGCTAAAACTCTCATGTTTGTGAATGTTTCTCCAGCGGCATCAAACTTGGACGAGACACATAACTCGCTTATGTATGCATCGCGAGTGAGGTCGATTGTGAATGACCCCAGCAAGAATGTTTCTTCGAAAGAGATAGCGCGACTGAAGAAGTTGGTTGCTTACTGGAAAGAACAAGCTGGTAGAAGGACTGAGGATGAAGAACTGGAAGAAATTCAAGAAGAAAGACCAAATAAAGATAGGGCAAGCTATTAG 2517 0.3913 MFVQLSYVQLQHDYILGNYPIGKDDAAQLSALQILAEVGYLGSPEACTDWNSLLERFLPRQIAMTRAKREWEMDILSRYHSLEHLNKDDARQQFLRILRALPYGNSVFFNVRKIDDPIGLLPGRIILGINKRGIHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVMLRRYSKARSAATGSLNGDISNNFKPPNLELYEKRVKDLSKLAEESQKNVDQLFQELREKQKQEEIMKEELESLKESLNADRKNLEEVSNDRDRLKSLCSEKDKALQAAILEKKNMEAKMTKLNNLVIENAAKKELIGTNNQVSQKLESELKLCKEELQAAEETIKSLTDEKLILEEKLSVLEKRSTEEITSLQRKLEQERKLVKSQVYELEKKLETVRQELVVAKSNISVKDSELAALQNNLKELEELREMKEDIDRKNEQTAAILKMQGAQLVEMEALYKEEQVLRKRYYNTIEDMKGKIRVYCRLRPLSEKEIAEKERQALAVVDEFSVEHMWKEDKPKQYVYDRVFDGGASQESVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSENNPGLTPRATAELFRILKRDNSKYAFSLKGMVAVENVTVLPISKIEDLNNIIQRGSERRHTSGTQMNEESSRSHLILSVVIESTNLQSQAVARGKLSFVDLAGSERVKKSGSVGSQLKEAQSINKSLSALGDVISALSNGGQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAASNLDETHNSLMYASRVRSIVNDPSKNVSSKEIARLKKLVAYWKEQAGRRTEDEELEEIQEERPNKDRASY 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60838g00001 838 Pfam FERM central domain 4 108 IPR019748 -
Stsc60838g00001 838 ProSiteProfiles FERM domain profile. 1 202 IPR000299 GO:0005856
Stsc60838g00001 838 Coils Coil 226 295 - -
Stsc60838g00001 838 Coils Coil 341 463 - -
Stsc60838g00001 838 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 814 IPR027417 -
Stsc60838g00001 838 Gene3D - 795 837 - -
Stsc60838g00001 838 Pfam Microtubule binding 479 622 IPR031852 GO:0008017
Stsc60838g00001 838 Coils Coil 303 323 - -
Stsc60838g00001 838 PRINTS Kinesin heavy chain signature 657 674 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc60838g00001 838 PRINTS Kinesin heavy chain signature 737 758 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc60838g00001 838 PRINTS Kinesin heavy chain signature 570 591 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc60838g00001 838 PRINTS Kinesin heavy chain signature 688 706 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc60838g00001 838 ProSiteProfiles Kinesin motor domain profile. 498 787 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc60838g00001 838 ProSitePatterns Kinesin motor domain signature. 687 698 IPR019821 GO:0003777|GO:0005524|GO:0007018
Stsc60838g00001 838 Gene3D Kinesin motor domain 440 621 IPR036961 -
Stsc60838g00001 838 Pfam Kinesin motor domain 623 787 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc60838g00001 838 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 106 214 - -
Stsc60838g00001 838 Gene3D - 106 213 IPR011993 -
Stsc60838g00001 838 SMART kinesin_4 496 795 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc60838g00001 838 SUPERFAMILY Second domain of FERM 3 103 IPR035963 -
Stsc60838g00001 838 MobiDBLite consensus disorder prediction 814 838 - -
Stsc60838g00001 838 SUPERFAMILY PH domain-like 108 196 - -
Stsc60838g00001 838 PANTHER KINESIN-LIKE PROTEIN KLP-3 330 827 IPR027640 GO:0003777|GO:0007018
Stsc60838g00001 838 Gene3D - 1 101 IPR014352 -
Stsc60838g00001 838 CDD FERM_B-lobe 3 101 IPR019748 -
Stsc60838g00001 838 SUPERFAMILY Prismane protein-like 441 502 IPR011254 GO:0003824|GO:0016491
Stsc60838g00001 838 CDD FERM_C_KCBP 105 211 - -
Stsc60838g00001 838 Gene3D Kinesin motor domain 622 794 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60838g00001 Stsc-Chr60838 8378 12946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60838g00001 1 836 Calmodulin-binding Proteins AT5G65930 69.816 0.0 1234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60838g00001 - - adu:107475586 1485.32