Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60832g00006 ATGGATCCAAGAAGGCATGGGAAGCTACCATTATCTACTTCATCATCAGATGCAAAAGAGAAAGAGGATGATGATGATGCTTATTATGGATCTAATTCTTGGTGCACATCTGAAGACACTGACATGTCAGCCATGGTTTCAGCTCTTGCTCAAGTTATGGCAACTTCCAATAATAATCAGAACCCTATGATGCTGCCACACTCAAACTCATCAAACCCTTTTCCTCTTTCACCTTCTTTGCTAATCAATGAACCTCTTCAACCTCACCCTCTTCAAGATCAAGAGGGGACAAATGAGAAGAAGCCCCACTACAGAGGAGTGAGACAGAGGCCATGGGGAAAGTGGGCAGCAGAAATAAGAGATCCAAAGAAAGCAGCAAGAGTTTGGCTTGGAACCTTTGACACCGCTGAAGATGCTGCCTTAGCTTATGACAAAGCCGCACTCAAATTCAAAGGCAACAAAGCCAAGCTCAATTTCCCTCAGAGAATCCTTCAACCAAACAACACTCAACATCAACAAGGTGGTGGTGGTGGTTCTGCCATTCAACAGAGTAGCCTAATCTTCAGTGCTTCAGCTTCTAATGTTGATCTTGCTACACCCTACTCACCAACATCATCATCATTATCCTCTACACATGATCATCAAGTTTTCCCAAACTTGTTTCAGTATGCACAGATTCTTTCAAGTGATGAAGCAAATTTCCCTTATTACACTTCAAATCTCTTCAATCAACAACAGCAGCAACAACCGCAACAACCTTTCAACCCATCATCCTATTTCTACAGCCAACAACAACAACAACATGATCATGAAGGAGGACACCATCATCACCAAGATCAGTAG 843 0.4259 MDPRRHGKLPLSTSSSDAKEKEDDDDAYYGSNSWCTSEDTDMSAMVSALAQVMATSNNNQNPMMLPHSNSSNPFPLSPSLLINEPLQPHPLQDQEGTNEKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAALAYDKAALKFKGNKAKLNFPQRILQPNNTQHQQGGGGGSAIQQSSLIFSASASNVDLATPYSPTSSSLSSTHDHQVFPNLFQYAQILSSDEANFPYYTSNLFNQQQQQQPQQPFNPSSYFYSQQQQQHDHEGGHHHHQDQ 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60832g00006 280 Gene3D AP2/ERF domain 103 162 IPR036955 GO:0003700|GO:0006355
Stsc60832g00006 280 SMART rav1_2 103 166 IPR001471 GO:0003700|GO:0006355
Stsc60832g00006 280 MobiDBLite consensus disorder prediction 1 31 - -
Stsc60832g00006 280 MobiDBLite consensus disorder prediction 243 267 - -
Stsc60832g00006 280 Pfam AP2 domain 102 152 IPR001471 GO:0003700|GO:0006355
Stsc60832g00006 280 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700|GO:0006355
Stsc60832g00006 280 CDD AP2 102 160 IPR001471 GO:0003700|GO:0006355
Stsc60832g00006 280 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Stsc60832g00006 280 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Stsc60832g00006 280 MobiDBLite consensus disorder prediction 243 280 - -
Stsc60832g00006 280 SUPERFAMILY DNA-binding domain 103 161 IPR016177 GO:0003677
Stsc60832g00006 280 PANTHER DNA-BINDING DOMAIN 61 256 IPR044808 GO:0003700|GO:0009873
Stsc60832g00006 280 FunFam Ethylene-responsive transcription factor 2 102 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60832g00006 Stsc-Chr60832 14378 19274 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60832g00006 45 242 AP2-EREBP Transcription Factor Family AT5G13330 45.226 2.46e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc60832g00006 AP2 9.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60832g00006 - - gmx:100796624 233.032