Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60832g00004 ATGGATTTATTGGTGCTGCGCTCTTTTTCTTGGCGGGAACAGCCTTTGTATCTGTCCAATGGTGGTGACATCTATGGATTTGATGAGGGGACAAATGAGAAGAAGCCTCACTACAGAGGAGTGAGACAAAGGCCATGGGGAAAATGGGCTGCAGAAATAAGAGATCCAAAGAAAGCAGCAAGAGTTTGGCTTGGAACCTTTGACACTGCTGAAGATGCTGCCTTAGCTTATGACAAAGCTGCACTCAAATTCAAAGGCAACAAAGCCAAGCTCAATTTCCCCCAGAAAATTCTTCAACCAAACAACACTTAA 312 0.4423 MDLLVLRSFSWREQPLYLSNGGDIYGFDEGTNEKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAALAYDKAALKFKGNKAKLNFPQKILQPNNT 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60832g00004 103 CDD AP2 36 94 IPR001471 GO:0003700|GO:0006355
Stsc60832g00004 103 FunFam Ethylene-responsive transcription factor 2 36 95 - -
Stsc60832g00004 103 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Stsc60832g00004 103 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Stsc60832g00004 103 Pfam AP2 domain 36 86 IPR001471 GO:0003700|GO:0006355
Stsc60832g00004 103 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
Stsc60832g00004 103 PANTHER DNA-BINDING DOMAIN 32 95 IPR044808 GO:0003700|GO:0009873
Stsc60832g00004 103 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Stsc60832g00004 103 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Stsc60832g00004 103 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60832g00004 Stsc-Chr60832 8769 9795 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60832g00004 34 103 AP2-EREBP Transcription Factor Family AT5G13330 80.000 1.45e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc60832g00004 AP2 1.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60832g00004 - - cam:101515629 128.257