Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60829g00001 ATGAAAGTAATGACCTTTTCTGGAGGCATAACAGCACCGAGTTCTTTGTTTGCTCCGACGGAAATGCCTATTTTAGCATTTGGTCATTCTAAGTTAAGTGCTGCATTGGCCCTTCGGTTGCCATGTAACTGCATGAGGAGGATGGGATTGGTTACAAAGCTTCAGTATTCTGTTACTAATAGGGCATCAACGGCTTCTAGTCATGTGGATTCACCGGCTTCCAACCGTGAGTTGCGTCCAGTGAGTAGGAGGCGGGGAGGTGGCTCATCGTTATATATTCGTCCTAGTTTATCAGTAATGAACAGGGATAGGGAGGAGATGCGCGAAATGGTTTACGAGTTCTTGCGGGGAATTGGAATTGTGCCTGATGAGCTAGATGGTCTTGAACTTCCTGTGACAGTTGATGTTATGAGGGAACGCATAGATTTTCTTCACAGTTTGGGGCTTACAATCGAAGACATTAACAACTATCCACTTGTTCTTGGTTGCAGTGTCAAGAAGAATATGATACCGGTGCTCGATTACCTCGGTAAATTGGGAGTTAGGAAATCCACGTTCACTCAGTTTTTGAGGAGATACCCACAAGTGCTTCATGCTAGCGTGGTTGTGGATCTTATGCCGGTGGTTAAGTATCTTCAAGGGATGGATATAAAGCCCAACGATATTCCTCGTGTTCTTGAGAAATACCCTGAAGTGCTAGGATTCAAACTCGAGGGAACCATGAGCACATCGGTTGCTTATTTGGTTGGGATTGGTGTATCAAGAAGAGAAGTTGGAGGGGTTTTAACTAGATATCCGGAGATTTTGGGGATGCGAGTTGGTAGAGTCATCAAACCTTTTGTGGAATTTCTGGAAAGCTTGGGGATTCCAAGGTTAGCCCTTGCTAGATTGATAGAGCAAAAACCTTATATTCTTGGGTTTGGACTGGATGAGAAGGTGAAGCCGAATGTGAAGTCCCTTGAAGAGTTTAATGTCAGGCGAACATCTCTTCCCTCCATAATTGCTCAATATCCTGACATCGTTGGAATTGACTTAAAGCCAAAGCTTGTGAATCAGAGGAATTTACTCAACTCTGTACTGGACGTGGATCCTGATGATTTTGGAAGAGTTGTTGAGAAGATGCCACAGATAGTTAGCCTCACCAAAGGACCTATGCTGAAACATGTAGATTTTCTTAAGGATTGTGGATTTTCCTTAGAGCAAATGAGGAAGATGATTGTTGGATGCCCTCAAGTACTGGCTTTAAACATTGATATCATGAAACTTAGCTTTGATTACTTCCAAAGAGAGATGAAAAGGCCCTTGGAAGACTTGGTTATTTTCCCAGCATTCTTCACATACGGTCTGGAGTCAACCGTAAAACCAAGGCATAAGGTGATTGCTAAGAAAGGATTGAAGTGTTCTCTTTCGTGGATGCTTAATTGCTCCGACGAGAAGTTTGAGCAACGGATGGAATATGACACTATTGACATGGAGGAGATGGAAATGGAGCCATCGTTTGATATGGATTCGCTTATGCAACCAAGGAATGATGAATCGGGTTCTGACTATGAAGATTATGATGATAGCGATGATGATTAG 1581 0.4301 MKVMTFSGGITAPSSLFAPTEMPILAFGHSKLSAALALRLPCNCMRRMGLVTKLQYSVTNRASTASSHVDSPASNRELRPVSRRRGGGSSLYIRPSLSVMNRDREEMREMVYEFLRGIGIVPDELDGLELPVTVDVMRERIDFLHSLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTQFLRRYPQVLHASVVVDLMPVVKYLQGMDIKPNDIPRVLEKYPEVLGFKLEGTMSTSVAYLVGIGVSRREVGGVLTRYPEILGMRVGRVIKPFVEFLESLGIPRLALARLIEQKPYILGFGLDEKVKPNVKSLEEFNVRRTSLPSIIAQYPDIVGIDLKPKLVNQRNLLNSVLDVDPDDFGRVVEKMPQIVSLTKGPMLKHVDFLKDCGFSLEQMRKMIVGCPQVLALNIDIMKLSFDYFQREMKRPLEDLVIFPAFFTYGLESTVKPRHKVIAKKGLKCSLSWMLNCSDEKFEQRMEYDTIDMEEMEMEPSFDMDSLMQPRNDESGSDYEDYDDSDDD 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60829g00001 526 FunFam Transcription termination factor mterf4, chloroplastic 137 274 - -
Stsc60829g00001 526 FunFam Transcription termination factor MTERF4, chloroplastic 275 489 - -
Stsc60829g00001 526 Pfam mTERF 173 481 IPR003690 GO:0003690|GO:0006355
Stsc60829g00001 526 SMART mt_12 435 466 IPR003690 GO:0003690|GO:0006355
Stsc60829g00001 526 SMART mt_12 151 182 IPR003690 GO:0003690|GO:0006355
Stsc60829g00001 526 SMART mt_12 331 363 IPR003690 GO:0003690|GO:0006355
Stsc60829g00001 526 SMART mt_12 368 398 IPR003690 GO:0003690|GO:0006355
Stsc60829g00001 526 SMART mt_12 403 434 IPR003690 GO:0003690|GO:0006355
Stsc60829g00001 526 SMART mt_12 259 290 IPR003690 GO:0003690|GO:0006355
Stsc60829g00001 526 SMART mt_12 295 326 IPR003690 GO:0003690|GO:0006355
Stsc60829g00001 526 SMART mt_12 187 218 IPR003690 GO:0003690|GO:0006355
Stsc60829g00001 526 SMART mt_12 223 254 IPR003690 GO:0003690|GO:0006355
Stsc60829g00001 526 MobiDBLite consensus disorder prediction 497 526 - -
Stsc60829g00001 526 Gene3D Transcription termination factor 3, mitochondrial 96 201 IPR038538 -
Stsc60829g00001 526 Gene3D Transcription termination factor 3, mitochondrial 275 490 IPR038538 -
Stsc60829g00001 526 MobiDBLite consensus disorder prediction 65 89 - -
Stsc60829g00001 526 PANTHER CGI-12 PROTEIN-RELATED 172 483 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60829g00001 Stsc-Chr60829 1213 2793 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc60829g00001 mTERF 7e-109 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60829g00001 K15031 - gmx:100785223 812.757