Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60828g00003 ATGGGAAGAGTTCCATGCTGTGATGACAAGAATGGTCTCAAGAAGGGTCCATGGACCCCCGAGGAAGATCTTAAACTTACCAACTACATCCAGACTCATGGCCCAGGAAATTGGCGCACCCTCCCCAAGAATGCCGGGCTTCAAAGATGTGGGAAGAGTTGCCGCCTAAGATGGACAAATTATCTGAGACCTGATATCAAGAGGGGAAGATTCTCTTTTGAAGAAGAGGAGGCTATTATTCAGTTGCATAGTGTCTTGGGAAACAAATGGTCGGCAATAGCAGCAAGACTTCCGGGAAGAACTGACAACGAAATCAAGAACTACTGGAACACTCACATTCGCAAGAGGCTTCTTCGGATGGGAATTGACCCAATTACCCACGCCCCACGCCTTGATATGTCCTCCATTTTAAGCACACTCATTACAAACCCTCCTTCTCTTCTCACTCTCCAAGCCCTATTACTCGCGGGTACTCCTTCTCCTCCTCAGCCTCAACCCACTTTATTCAACCCTCAATTGCTTAAGTTATTAGCTGCAACAACAACTACTCCATCAACTCTAATGTCCACCAAAAATGACCATAACAACCCCAATTTTGCATCCTCCTGCTCGTCATCGTCGCAGAATATTAATAACAATAATAATGATATTCTACAACAAATCCTTGGTGGCAATCTCAGTCAATTAGTTGCACCAAAAGAAGAGTTTCTTAATAGTGGTCATCATTTTGAGACACCGATTTCAACAATTCATAATAATGTTGAGGGCTTAATGGGGAATCAAAATAATGATATTCTTAATAATGCTTTGCAACAAGATGGTCAAGTTGGTTTGCTAGGGAACCGGGATTTGGAGGATAATAATATTATTGCAAACCAAAATAATTTGGGGTATGATTCGGTGCTGTCAAGCCCAAATCAGATGAATTCATCATCAACTACGTATGTGAATAGCAGTGCGGAGGAAGAAAGCTATTGCAGTGAATTATTCAAGTTCCAGATTCCAGACACTCTGGATATTAATGATTTTTTGTAA 1035 0.4184 MGRVPCCDDKNGLKKGPWTPEEDLKLTNYIQTHGPGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEEAIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPITHAPRLDMSSILSTLITNPPSLLTLQALLLAGTPSPPQPQPTLFNPQLLKLLAATTTTPSTLMSTKNDHNNPNFASSCSSSSQNINNNNNDILQQILGGNLSQLVAPKEEFLNSGHHFETPISTIHNNVEGLMGNQNNDILNNALQQDGQVGLLGNRDLEDNNIIANQNNLGYDSVLSSPNQMNSSSTTYVNSSAEEESYCSELFKFQIPDTLDINDFL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60828g00003 344 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Stsc60828g00003 344 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Stsc60828g00003 344 Gene3D - 70 117 - -
Stsc60828g00003 344 FunFam Transcription factor MYB39 70 131 - -
Stsc60828g00003 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc60828g00003 344 Gene3D - 14 67 - -
Stsc60828g00003 344 FunFam MYB-related transcription factor 14 67 - -
Stsc60828g00003 344 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc60828g00003 344 SMART sant 14 64 IPR001005 -
Stsc60828g00003 344 SMART sant 67 115 IPR001005 -
Stsc60828g00003 344 CDD SANT 70 113 IPR001005 -
Stsc60828g00003 344 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Stsc60828g00003 344 CDD SANT 17 62 IPR001005 -
Stsc60828g00003 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Stsc60828g00003 344 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Stsc60828g00003 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60828g00003 Stsc-Chr60828 34139 36620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60828g00003 1 344 MYB Transcription Factor Family AT4G21440 48.468 6.88e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc60828g00003 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60828g00003 K09422 - gmx:102668351 341.273