Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60826g00005 ATGCCAGGTCTGGAATATCTGCATAATGGTTGCAAGCCGTTAATAATTCACAGAGATGTGAAATGTGCAAATATTTTATTAACTGAAAAATTTCAAGCCAAATTGGCTGATTTTGGCCTATCCAGAAGCTTTATTGCTGATGGTGACACGCATATCTCCACCGCCGTCGTTGCCGGAACTCTTGGTTACCTAGATCCTCAGTGTACCATGTTAAACAGATTCACAGAGAAAAGTGATGTTTACAGCTTCGGAGTAGTTCTTTTGAAGATAATCACGGGTCTACCGGCAATATCAGAAAGCGAGGATAAGGTTCACATAAGTCACCACGTTGATTCCTTTCTTTCTAAAGGGGATATAGAAGGTATTGTTGACTCAAATTTACAAGTAGATTTTGACAGTAGCTCTGTCTGGAAAGCTGTTGAAATAGCAATGGCTTGTGTGTCCTTTAGCCCTAACAAAAGGCCATACATGAGTGATGTATTGGCTGTGCTAAAGGAATGTTTGGCATTAGAGTTAGCTCGGAAACAATCCAACATTGACACAGAAAACAATGAGTTAATTGAGTTCACCCATAATCTGACTTCTGAAACTGGCCCCTTAATAAGGTAG 609 0.4007 MPGLEYLHNGCKPLIIHRDVKCANILLTEKFQAKLADFGLSRSFIADGDTHISTAVVAGTLGYLDPQCTMLNRFTEKSDVYSFGVVLLKIITGLPAISESEDKVHISHHVDSFLSKGDIEGIVDSNLQVDFDSSSVWKAVEIAMACVSFSPNKRPYMSDVLAVLKECLALELARKQSNIDTENNELIEFTHNLTSETGPLIR 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60826g00005 202 PANTHER OS07G0107800 PROTEIN-RELATED 3 174 - -
Stsc60826g00005 202 Gene3D Transferase(Phosphotransferase) domain 1 1 193 - -
Stsc60826g00005 202 SUPERFAMILY Protein kinase-like (PK-like) 3 164 IPR011009 -
Stsc60826g00005 202 ProSitePatterns Serine/Threonine protein kinases active-site signature. 15 27 IPR008271 GO:0004672|GO:0006468
Stsc60826g00005 202 Coils Coil 165 185 - -
Stsc60826g00005 202 Pfam Protein kinase domain 3 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60826g00005 202 ProSiteProfiles Protein kinase domain profile. 1 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60826g00005 202 SMART serkin_6 1 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60826g00005 Stsc-Chr60826 38639 39386 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60826g00005 3 202 Receptor kinase-like Gene Family AT1G51820 56.500 9.21e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc60826g00005 Pkinase 1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60826g00005 - - aprc:113849011 258.07