Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60826g00004 ATGGTGATATGCAGGTACAAGGATGATGTTTATGACAGAATTTGGGGGCCAATAAGCTTTGATCTTTGGACATCAATAGGGAGCAAACTCACAGATGATGAACTAACTCAGAATCATTACAAGCCACCAACAATTGTAATGAGCACAGCTGCTACACCGATCAACGCTAGCGCTTCTTTCGATTTCTACTGGGATCCTGATAATGTGGATGAGCAATACTATGTGTTCATGCATTTTAATGAAGTTAAGAAGCTACTACCAAATGAAACAAGATCATTCAATGTAACACTTAATGGAAAGTATTGGTATGATGGACCTCTTGTGCCTCAATACCAATCAACATCCACCATTTTTAGTCCTTCAGCTTTGGGAGGAGAGTCTAGGTACCTGTTTTCGCTTATCCGGACCGAGGATTCTACTCTTCCTCCAATCATCAATGCCATTGAAGTTTATACAGTGAAAGATTTCTCAAGACCAGAAACTTTACAAGATGATGTTGATGCCATCACAAACATCAAGAAAGATTATGGGGTGGCTAGAAATTGGGAAGGTGATCCATGTGGCCCTATAAAATATGTTTGGCAAGGTCTAAATTGTAGTTTTGATGGCAATGATCCCCCAAGAATCACATCCTTGAACTTGTCTTCCAGTGGATTGAAAGGGCAGATATCATCTTACATCTCCAAGCTCACTATGTTACAATACTTGGATTTATCAAACAATAACTTAACTGGATCAGTACCTGATTTCCTGACACAACTTCAGTCATTGAAAGTATTAAACTTGGGAAACAACAATCTCACAGGCTTAGTTCCTAGTGGACTCCTTGATAAATCAAAGAAAGGTTCACTATCATTGAGTGTGGGGCAAAATCCAAACCTCTGTGCATCAACTTCATGCAACCAACAAACAACAGGTGGTGCAATAAGCAACAACAAGAAGAAGAAAAATCACATAGTGATTCCCATTGTAGCATCAATTGCTGGGGTTTTGGTGCTTCTAGCAATTGTAGCAACAGCTGTCATCTGTGGACTTAAAAAGAGAAAGCCAAAAGCTGCTGTGAACATTGATGAGGAACACAATGCTGCAAATTTTTCACAATTTGGACCAAACCAAAGACAATATACATTCAATGAAATTGTTAAGATCACCAACAACTTCAATAGAATTCTTGGTAGAGGTGGATTTGGTACAGTTTACCATGGATTAGTTGGTGACACTCAAGTAGCCGTCAAGATGCTTTCGCCATCGGCAGTGCGAGGATACGAACAATTTCTAGCAGAGGTTAAACTTCTGATGATAGTACACCATAGAAATCTCACTTCTCTTATTGGTTATTGCAATGAAGAAAGCAATATAGGACTCATCTATGAATACATGGCGAACGGAAACTTAGAAGAACATCTTTCAGGAAAAAAGAACAATGCAAAGTTGTTGACATGGGAAGAGAGACTCAGAATAGTAGTGGATGCAGCACAAGGATTGGAATATCTGCATAGTGGTTGCAAGCCACCTATAATCCACAGAGATGTGAAATGTGCAAACATTTTATTGAATGAAAACTTTCAAGCAAAATTGGCTGATTTTGGACTATCCAAACCAATTCCCACTGAAGAAGGCACACACATTTCAACTGTTGTTGCTGGAACTCCTGGTTACTTAGATCCTGAGTATCGAAATTCAAACAAGTTGGCAGAGAAAAGTGATGTTTACAGCTTTGGAGTAGTTCTTTTCAAGATAATCACAGGTCAAGCAGCATATGTGAAGATGCAGGGCGACGACGAAAACGAGCCTCACATAAGTTCTTGGGTTAGTTCCAAGGTTTCCAATGGAGACATAAAGAGTATTGTTGACTCAAAGTTACAAGAAGATTATGACAGTGGGTCTGTGTGGAAAGCTGTTGAAATAGGAATGGCTTGTGTGGGATCAACTTCTAACAAGAGGCCTCACATGAGTGTTGTTGTGACTGAGCTAAAGGAGTGTTTGGCTGCAGAATTAGCACGCAAAAGAATTGGTCATGACACTGAACAAAGTGATTCACTTGATAGTGAGTTGGCTTCCATAAGTGTGACTACAACTGAATTTGTTGACCCCATAGCTAGGTAG 2106 0.3965 MVICRYKDDVYDRIWGPISFDLWTSIGSKLTDDELTQNHYKPPTIVMSTAATPINASASFDFYWDPDNVDEQYYVFMHFNEVKKLLPNETRSFNVTLNGKYWYDGPLVPQYQSTSTIFSPSALGGESRYLFSLIRTEDSTLPPIINAIEVYTVKDFSRPETLQDDVDAITNIKKDYGVARNWEGDPCGPIKYVWQGLNCSFDGNDPPRITSLNLSSSGLKGQISSYISKLTMLQYLDLSNNNLTGSVPDFLTQLQSLKVLNLGNNNLTGLVPSGLLDKSKKGSLSLSVGQNPNLCASTSCNQQTTGGAISNNKKKKNHIVIPIVASIAGVLVLLAIVATAVICGLKKRKPKAAVNIDEEHNAANFSQFGPNQRQYTFNEIVKITNNFNRILGRGGFGTVYHGLVGDTQVAVKMLSPSAVRGYEQFLAEVKLLMIVHHRNLTSLIGYCNEESNIGLIYEYMANGNLEEHLSGKKNNAKLLTWEERLRIVVDAAQGLEYLHSGCKPPIIHRDVKCANILLNENFQAKLADFGLSKPIPTEEGTHISTVVAGTPGYLDPEYRNSNKLAEKSDVYSFGVVLFKIITGQAAYVKMQGDDENEPHISSWVSSKVSNGDIKSIVDSKLQEDYDSGSVWKAVEIGMACVGSTSNKRPHMSVVVTELKECLAAELARKRIGHDTEQSDSLDSELASISVTTTEFVDPIAR 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60826g00004 701 Gene3D Transferase(Phosphotransferase) domain 1 460 672 - -
Stsc60826g00004 701 FunFam Leucine-rich repeat receptor-like protein kinase 357 459 - -
Stsc60826g00004 701 CDD STKc_IRAK 391 660 - -
Stsc60826g00004 701 Pfam Leucine Rich repeats (2 copies) 231 270 IPR025875 -
Stsc60826g00004 701 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 460 671 - -
Stsc60826g00004 701 Gene3D Ribonuclease Inhibitor 166 288 IPR032675 -
Stsc60826g00004 701 ProSiteProfiles Leucine-rich repeat profile. 256 277 IPR001611 GO:0005515
Stsc60826g00004 701 Pfam Protein tyrosine and serine/threonine kinase 387 656 IPR001245 GO:0004672|GO:0006468
Stsc60826g00004 701 ProSitePatterns Protein kinases ATP-binding region signature. 391 412 IPR017441 GO:0005524
Stsc60826g00004 701 SUPERFAMILY L domain-like 192 285 - -
Stsc60826g00004 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 506 518 IPR008271 GO:0004672|GO:0006468
Stsc60826g00004 701 SMART LRR_typ_2 230 253 IPR003591 -
Stsc60826g00004 701 SMART LRR_typ_2 254 277 IPR003591 -
Stsc60826g00004 701 ProSiteProfiles Protein kinase domain profile. 385 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60826g00004 701 PANTHER OS07G0107800 PROTEIN-RELATED 5 662 - -
Stsc60826g00004 701 SMART serkin_6 385 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60826g00004 701 FunFam Leucine-rich repeat receptor-like kinase 164 297 - -
Stsc60826g00004 701 ProSiteProfiles Leucine-rich repeat profile. 232 254 IPR001611 GO:0005515
Stsc60826g00004 701 Pfam Malectin-like domain 4 153 IPR024788 -
Stsc60826g00004 701 SUPERFAMILY Protein kinase-like (PK-like) 366 658 IPR011009 -
Stsc60826g00004 701 PRINTS Leucine-rich repeat signature 233 246 - -
Stsc60826g00004 701 PRINTS Leucine-rich repeat signature 254 267 - -
Stsc60826g00004 701 Gene3D Phosphorylase Kinase; domain 1 372 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60826g00004 Stsc-Chr60826 22730 25849 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60826g00004 5 701 Receptor kinase-like Gene Family AT1G51800 47.532 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc60826g00004 PK_Tyr_Ser-Thr 5.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60826g00004 - - gmx:100779474 915.99