Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60826g00001 ATGCCCAATAATAGTAACTTAACTCCATGTGTTGTTACATACCCAAATTCATCAGAACAATTGATTCATTTTCAGCAGCAAGATGTGGTGAAATCATCATCATCATCATTAGGGGTTGGAGCCATAATGTCACTATCAGAAAATGGACCTTACAATATGGATAATAATTACCAGATAATTGGTAAGTACATCATGGAAGATTTCAACATGGCCCAACATAACCACCACCAACAACAGCAGCAACATAGCAATAATAATAATGATTCTTGTTGTTCTCTTGAATCTCTTGATCATCATTGCTTGATTTCATCAGCTACAAATAGTGTAGCAGAAGATAATTATGATAATAATGATAATAAGGATAATGATGGTGGGATTTCAAAGATCTTGTTATCTGATGGTGATTGCACAAACTACTTGTGGAACTTGAGTGGTTCTACTGATGCTGCTTCCTCTGCTGAATCTGAAAGCAACTATAATGAAGCTTCCATGCTTCCATGCTCTCATCAAAACAACTCAGATCATCAACAATACATCAATCAAGGAGGACAATTCAATCCTACTATTATTATGAATGAGGATCAATCACCAATTATCAAGATAGAGAATCCACCAAGATCCAAGAAACCCAGATGGGTAAAGACTCCATTTTCATCAACAATAAGTTTCCAAAACCCAAATGAAGCATCAGCAATAATGCCATCAACTTCAGCCACTGATGAAGAAGCTGATCCAGAGGCCATAGCACAGATGAAGGAAATGATATATAGAGCAGCAGCATTCAGGCCAGTGAACTTGTTAGACTCAGATGAAGTGATGGAGAAGCCAAAGAGGAAGAATGTGAGGGTTTCAAGTGATCCACAAACTGTGGCTGCAAGGCAAAGAAGAGAGAAAATCAGCCAAAAGATTAGGGTTTTGCAGAAGATTGTTCCTGGTGGAACCAAAATGGACACTGCATCAATGCTTGATGAAGCTGCAAATTATCTTAAGTTTTTGAGGTCACAGGAATCAAAACCGGGGATATGGGGAAGGGGAATCACTAGCTACCAAGGTAGCGCCAACTGA 1065 0.3859 MPNNSNLTPCVVTYPNSSEQLIHFQQQDVVKSSSSSLGVGAIMSLSENGPYNMDNNYQIIGKYIMEDFNMAQHNHHQQQQQHSNNNNDSCCSLESLDHHCLISSATNSVAEDNYDNNDNKDNDGGISKILLSDGDCTNYLWNLSGSTDAASSAESESNYNEASMLPCSHQNNSDHQQYINQGGQFNPTIIMNEDQSPIIKIENPPRSKKPRWVKTPFSSTISFQNPNEASAIMPSTSATDEEADPEAIAQMKEMIYRAAAFRPVNLLDSDEVMEKPKRKNVRVSSDPQTVAARQRREKISQKIRVLQKIVPGGTKMDTASMLDEAANYLKFLRSQESKPGIWGRGITSYQGSAN 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60826g00001 354 SMART finulus 289 338 IPR011598 GO:0046983
Stsc60826g00001 354 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 66 335 IPR045843 GO:0003700|GO:0006355
Stsc60826g00001 354 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 288 337 IPR036638 GO:0046983
Stsc60826g00001 354 Gene3D - 288 339 IPR036638 GO:0046983
Stsc60826g00001 354 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 283 332 IPR011598 GO:0046983
Stsc60826g00001 354 Pfam Helix-loop-helix DNA-binding domain 293 332 IPR011598 GO:0046983
Stsc60826g00001 354 CDD bHLH_AtIND_like 284 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60826g00001 Stsc-Chr60826 3809 5708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60826g00001 78 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 46.454 1.32e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60826g00001 HLH 4.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60826g00001 - - aip:107616571 429.483