Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60824g00004 ATGAGTAAGTGGTCCATTGACCACACCCATTTGAAGATGGCTTGGATTCAACACCTCCAAATCAACCTAAAAAACGGTTACATAACAAACCCACCTCCTCTTTTGCCGTCACCGTCTTCAACATCACCATATTCTGGAACCTTTCAGAAAGAACCACTCTCTTCTTCAACAACACCTCCACCTTCATCATCCGGGGCTAAAATCAGCCCTGCTGTTCTCTTCATCATTGTGATTCTCGCTGTTCTTTTCTTCATCTCCGGTCTCCTGCACCTGCTTGTTAGGTTTCTTGTTAAAAGCCCTTCATCTTCTTCCTCCGCATCTGCTCAACCTAACAGGCACCACGAAGGTTCTCTCTCCGATTCTCTTCAGAGGCAGCTTCAGCAGCTTTTCCATCTCCATGACTCTGGTCTCGACCAGGCTTTCATTGATTCTCTGCCTGTTTTCCAGTACCGCGAGATCAAGGGGCCGAAGGAGCCCTTCGACTGCGCCGTTTGCCTCTGCGAGTTTTCCGACAAGGATAAGCTCAGGTTGCTCCCTGTGTGCAGCCATGCCTTCCACATCAGCTGTATAGACACGTGGCTTCTTTCGAATTCCACTTNNNNNNNNNNGCTCTTCGCGCCGGGGTTTTCGATCGAGAATCCGGTGTTTGATTTCAATGATTTGAGGGAAGATGAGGGCTGCCCCCGCCCCTGTAGTAACAATAACAAGGTTGAGATTGAAGAGATTGAAGAAACTGTGAACAAGGGGATTCTTCCTGTGAGACTTGGTAAATTTAGGAGGGTGGATTTGGGGGCTGATTTCGAAGGAGGAGAGGCTAGTAGTAGTAATTTGGATGCTAGAAGATGTTACTCAATGGGGTCTTACCAATATGTGCTCGGAAATTCGGACCTCCGGGTAGCCTTGAATAGTGGTAATCACCGGCAGGGTCGCGACACGGCTAATCTTAATGAAGGAACGGAAGAGAATTCGGAGAAGATATCGGTTGAGGTGGTGGAGAGGGAAGGGAAGAACATTACTAGTGTTAGCAGGGGAGAGAGCTATTCTGTTTCCAAAATATGGTTGTGGTCAGAGAAGGGCAAATTTTCAGTTTCTTCAGATGCACACAACATTGGACTACCATCTTCTCTTAATTCCGATTTGCCTTGGATGAGAGAAATTGAAGGTACATGA 1170 0.4684 MSKWSIDHTHLKMAWIQHLQINLKNGYITNPPPLLPSPSSTSPYSGTFQKEPLSSSTTPPPSSSGAKISPAVLFIIVILAVLFFISGLLHLLVRFLVKSPSSSSSASAQPNRHHEGSLSDSLQRQLQQLFHLHDSGLDQAFIDSLPVFQYREIKGPKEPFDCAVCLCEFSDKDKLRLLPVCSHAFHISCIDTWLLSNSTXXXXLFAPGFSIENPVFDFNDLREDEGCPRPCSNNNKVEIEEIEETVNKGILPVRLGKFRRVDLGADFEGGEASSSNLDARRCYSMGSYQYVLGNSDLRVALNSGNHRQGRDTANLNEGTEENSEKISVEVVEREGKNITSVSRGESYSVSKIWLWSEKGKFSVSSDAHNIGLPSSLNSDLPWMREIEGT 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60824g00004 389 SUPERFAMILY RING/U-box 141 199 - -
Stsc60824g00004 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 231 IPR013083 -
Stsc60824g00004 389 MobiDBLite consensus disorder prediction 40 62 - -
Stsc60824g00004 389 Pfam RING-like zinc finger 161 190 IPR001841 -
Stsc60824g00004 389 CDD RING-H2_EL5-like 161 199 - -
Stsc60824g00004 389 ProSiteProfiles Zinc finger RING-type profile. 162 228 IPR001841 -
Stsc60824g00004 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 63 353 - -
Stsc60824g00004 389 MobiDBLite consensus disorder prediction 32 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60824g00004 Stsc-Chr60824 33365 36750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60824g00004 37 360 C3H Transcription Factor Family AT2G18650 38.630 4.58e-48 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60824g00004 - - qsa:O6P43_004596 442.58