Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60822g00001 ATGGCCGGCGAACTTGCCGGAGACAGAACGCCGGAGATTCTAGCCATCGTCCACGACATCTCCGCCATGTGCGTCGGAGCCCTTGGTACCGGCTCCTCCACCGCCGCACCAGCACCCACACCACCACTCCCTACCACCGCCATTGCTGGCGACGGCACCTTCAGGAAGGACTGCACCGATCTGGTGCGACGGATCTCCCTCCTCACGCACCTCTTCGAGGAGATTAAGGAGCTCAACAAGGTTGTTGTCGACTCTGCTTCCAGTTCCGAAAGTGGTGGTGGTGGTGGTGGTGATGCTTCTGATGGCGATGGAGATGGTGGTGGTGTTGCTTCTTGGTCGTGTGATGTGGTGGTGGCGCTTCAATCGGCAAAGCGATTGCTTTCGGTGGCGAGGAACTTCCGTTCCAATTGCTCTTCTGATGGAGCTGCCAAGACCATTATCTTCCAGTTTCAGAGTGTGACATGGAAATTGGAAAAACTACTAAGCAACCTACCATATGATCATTTAGACATTTCAGAAGAAGTCAGAGAACAGGTGGACCTGGTCAGAACACAATTAAGACGAGCCTCCGATAAATATGGGTTTATGATTTCAAAAATGCCATCTTATAAATTATCTGAACCACTTGCTCAAGAAATCAGTGAGGTTCCTGGTAAAACCATGAGTGGATTGCATAAACAACACAGCTGTCCTGAAAACTTATCAGAATTAGACAAAATCCCCACAAACAATGGAGGGGAAGTTTGCAGTAGACAGCAAGGAAGTTCTCGCTTGGAAAGAGCTAGGAGCATCCCTACGATGTCTGATATCTCCTTAGCAAATGTAACTGATACTGAAAGTGAAGAAAACTCAGAGAGTAAGAGCCCACCTGATGTTAAAAAGTCCGAAGGAATTTTAATTCCCGAAGACTTTCTTTGCCCTATATCCTTGGAACTAATGAGAGATCCGGTTATTGTCGCCACCGGTCAGACGTATGAGAGATCTTATATACAGAGATGGATAGATTGTGGGAATACAACATGTCCTAAAACTCAGCAGAAGCTCCAGCATTTGACACTTACACCGAACTATGTTTTAAGGAGCCTTATTTCTCAGTGGTGTATAGAGCACAACATTGAGCAGCCAACAGGACTAACTAACGGAAAAATAAAGAAGAGTGACGGATCGTTCAGAGATGTCACAGGTGACATAGCAGCAATTGAAGTTCTAGTACGAAAGCTCTCCAGCCGGTCTCTTGAGGATCGTAGAGCGGCTGTAACTGAAATTCGATCACTTTCCAAACGTAGCACTGACAACAGGATACTAATTGCTGAAGCTGGAGCAATTCCAGTTCTAGTCAACCTTCTAACATGCGAAGATGTGTTGACTCAGGACAATGCAGTGACTTCAATTCTCAACCTTTCTATATATGAAAACAACAAGGGACTCATAATGCTTGCAGGTGCCATTCCATCCATTGTCCAGGTTCTCCGAGCTGGAACCATGGAAGCAAGGGAAAACGCTGCAGCAACCCTTTTCAGCTTGTCTCTTGCCGATGAAAATAAAATAATAATCGGTGCCTCAGGTGCTATCCCGGCATTGGTAGAATTGCTCCAAAATGGGAGCCCGAGAGGGAAGAAAGATGCAGCAACAGCATTGTTCAATTTATGTATTTATCAAGGAAACAAAGGCAGGGCTATTAGAGCAGGGATTATAACAGCACTGTTGAAAATGCTTACGGATTCAAGCAAATCAATGGTTGACGAAGCCCTCACAATAATGTCTGTTCTTGCCAGCCATCAAGAAGCAAAGGTAGCTATAGTTAAAGCCAGCACCATACCAGTTTTGATAGATCTCTTGAGGACCGGATTGCCTCGCAACAAAGAGAATGCGGCCGCCATTTTACTCGCATTGTGCAAGCGGGATACCGAAAATCTTGCTTCTTTAAGTAGACTTGGTGCTGTAATACCCCTTACTGAACTCTCACGGAGCGGTACAGAGAGGGCAAAAAGGAAAGCTACTTCGTTATTAGAGCATCTTCGCAAGTTGCAGCAAGTTTGA 2040 0.4608 MAGELAGDRTPEILAIVHDISAMCVGALGTGSSTAAPAPTPPLPTTAIAGDGTFRKDCTDLVRRISLLTHLFEEIKELNKVVVDSASSSESGGGGGGDASDGDGDGGGVASWSCDVVVALQSAKRLLSVARNFRSNCSSDGAAKTIIFQFQSVTWKLEKLLSNLPYDHLDISEEVREQVDLVRTQLRRASDKYGFMISKMPSYKLSEPLAQEISEVPGKTMSGLHKQHSCPENLSELDKIPTNNGGEVCSRQQGSSRLERARSIPTMSDISLANVTDTESEENSESKSPPDVKKSEGILIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEVLVRKLSSRSLEDRRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTCEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTENLASLSRLGAVIPLTELSRSGTERAKRKATSLLEHLRKLQQV 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60822g00001 679 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 481 523 IPR000225 GO:0005515
Stsc60822g00001 679 Gene3D - 580 679 IPR011989 -
Stsc60822g00001 679 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 522 564 IPR000225 GO:0005515
Stsc60822g00001 679 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 563 605 IPR000225 GO:0005515
Stsc60822g00001 679 PANTHER U BOX DOMAIN-CONTAINING 55 675 - -
Stsc60822g00001 679 MobiDBLite consensus disorder prediction 280 295 - -
Stsc60822g00001 679 SUPERFAMILY RING/U-box 300 374 - -
Stsc60822g00001 679 MobiDBLite consensus disorder prediction 238 279 - -
Stsc60822g00001 679 ProSiteProfiles U-box domain profile. 299 373 IPR003613 GO:0004842|GO:0016567
Stsc60822g00001 679 SMART Ubox_2 303 366 IPR003613 GO:0004842|GO:0016567
Stsc60822g00001 679 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 440 482 IPR000225 GO:0005515
Stsc60822g00001 679 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 373 IPR013083 -
Stsc60822g00001 679 Pfam U-box domain 300 371 IPR003613 GO:0004842|GO:0016567
Stsc60822g00001 679 Pfam Armadillo/beta-catenin-like repeat 430 468 IPR000225 GO:0005515
Stsc60822g00001 679 Pfam Armadillo/beta-catenin-like repeat 512 550 IPR000225 GO:0005515
Stsc60822g00001 679 FunFam RING-type E3 ubiquitin transferase 299 374 - -
Stsc60822g00001 679 Coils Coil 172 192 - -
Stsc60822g00001 679 SMART arm_5 470 510 IPR000225 GO:0005515
Stsc60822g00001 679 SMART arm_5 593 633 IPR000225 GO:0005515
Stsc60822g00001 679 SMART arm_5 429 469 IPR000225 GO:0005515
Stsc60822g00001 679 SMART arm_5 635 675 IPR000225 GO:0005515
Stsc60822g00001 679 SMART arm_5 511 551 IPR000225 GO:0005515
Stsc60822g00001 679 SMART arm_5 552 592 IPR000225 GO:0005515
Stsc60822g00001 679 MobiDBLite consensus disorder prediction 238 295 - -
Stsc60822g00001 679 FunFam RING-type E3 ubiquitin transferase 579 678 - -
Stsc60822g00001 679 FunFam RING-type E3 ubiquitin transferase 378 578 - -
Stsc60822g00001 679 Gene3D - 394 579 IPR011989 -
Stsc60822g00001 679 CDD RING-Ubox_PUB 301 353 IPR045210 -
Stsc60822g00001 679 SUPERFAMILY ARM repeat 399 673 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60822g00001 Stsc-Chr60822 7279 11117 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60822g00001 52 678 U-box Gene Family AT1G23030 63.449 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60822g00001 - - adu:107484242 1157.51