Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60821g00007 ATGGATTTACATCAGTATTTTGATGAGGGCATGCCCCAAATCGACTATTTCGAAGATAATTCGTCTCTGGAAATGTGGAAATGTGCCAGTGATGCCATTGCAGATTCTGAAAGAAATGCCTCTAGTGGCTTTGACTGTAACATCTGCCTGGAAGGCGTGCAAGATCCGGTGGTAACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAGTTTCCGAAACATCTCTTCCGAAATAGGAGAGAAGCAGAAGCCACAATGTCCAGTATGCAAGTCAGAAATTTCTCAGTCCTCCCTTGTTCCCCTGTACGGCCGCGGCCAAGATAGTTCAGCCTCAGAAGACAAGGCTCGCCAAGTACCGCGGCGACCCCTTGGTCCAATATCATCGAGTACCGCTACGGTTTCCCAACCTACATCTCGAGTTTATCATTCCCATTATCCGGATCCTTCTCAACAATTCAACTCCATTCCTGGTAGTCACGCTTCGCCTATGCTTAACGCAGGCAGTTCACTAACAAACTCCTTCAACACGACATATGGAATCATCGGGGAAACAATATATGCAAGGGTATTCGGAAACCAGGTGACCAACATATACACATACCCCAATTCATACCATCTTTCTGGGAACAATAATCCAAGGATCAGAAGGTATCTCATGGAAGCTGATAGATCACTGAGCAGAATATGTTTTTTCCTCTTTTGTTGCACAGTTTTGTGTCTTCTCTTATTCTGA 747 0.4511 MDLHQYFDEGMPQIDYFEDNSSLEMWKCASDAIADSERNASSGFDCNICLEGVQDPVVTLCGHLYCWPCIYKWLSFRNISSEIGEKQKPQCPVCKSEISQSSLVPLYGRGQDSSASEDKARQVPRRPLGPISSSTATVSQPTSRVYHSHYPDPSQQFNSIPGSHASPMLNAGSSLTNSFNTTYGIIGETIYARVFGNQVTNIYTYPNSYHLSGNNNPRIRRYLMEADRSLSRICFFLFCCTVLCLLLF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60821g00007 248 MobiDBLite consensus disorder prediction 128 147 - -
Stsc60821g00007 248 Pfam Zinc finger, C3HC4 type (RING finger) 46 94 IPR018957 GO:0046872
Stsc60821g00007 248 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Stsc60821g00007 248 SUPERFAMILY RING/U-box 41 107 - -
Stsc60821g00007 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 125 IPR013083 -
Stsc60821g00007 248 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
Stsc60821g00007 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 245 IPR045103 GO:0005783|GO:0006511|GO:0061630
Stsc60821g00007 248 MobiDBLite consensus disorder prediction 106 147 - -
Stsc60821g00007 248 SMART ring_2 46 94 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60821g00007 Stsc-Chr60821 30668 33171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60821g00007 39 248 C3H Transcription Factor Family AT4G28270 36.239 2.28e-43 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60821g00007 K10666 - gmx:100785491 339.732