LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60821g00001	ATGGATGATGCTAATAATAAGCATAACAAGTTCAGGAACATGGGTGTGGATGATGACAGTGGTGCACACAAGGTATTCGATGAAATGAATGATCCAACCTTGTTTCAATGGAAGCCACTTTTTGATGAAGCTTCCCTCTTACATAACAGGCCTCTCAAGAAGATTCGAAGCCCTCAACGTTCTTCTTCTTCTTCTTCTTCTTCATTTCAACAACCTCTTCCTTCTCCTTCTTCTTCCTCCTCTGTTCCTCCATCTTCATCATCAAGAATAGTATTCCCTTTTGCATTTGATCCCTCACAACAAAACCCCATGCAAATGCAAATGCAGTTCCCTTACCAATACGGAACAACAACTACCCCTTTCATGCAGCCAACATCACAGAACCAAATGATATCTTTCGGTTCTCAATCTCATCATCCTCAGCATCAACACAACATGAACATGAACACAGTGTATCAACCTCAAATGCTACAGCAACAGAATCAGCAGCAGATTCTTCAGTATTGGAGCGAAGCACTGAACCTTAGTCCAAGAGGGAGAATGATGATGATGAACAACAGGTTAAGGCCACCACCCCCACAGCCCTTGAACACCACGAAGCTGTATAGGGGTGTGAGGCAACGCCATTGGGGGAAATGGGTTGCTGAGATTCGTCTACCTCGAAACAGGACTAGACTCTGGCTTGGCACCTTTGACACTGCAGAAGATGCTGCCATGGCCTATGATCGTGAGGCTTTCAAGCTTAGAGGTGAGAATGCACGCCTCAATTTCCCTGAACTCTTCCTCAACAAAAAGGAAGAAGAAGAAGCACCTTCTGATGCTCCTACTACTTCATCTCCTTCCTCTTCTATTACAACAACAAAGCAAGTTGAAGAGGTTTCTGAAGGTGGGAATGTAGACAAGAGTCCAATGGAAGAGGAGAATGAGAATGAGAATTCAACAAGTGTGAGTGGTGAAGGGGTTTCTCAAGAGCTGGTTTGGGGAGAGATGTCTGCATGGTTTAATGCTATTCCTTCAGGTTGGGGTCCAGGTAGTCCTGTTTGGGATGATTTGGACACTTCCAACAACGGTTTTCTTTTGCAACCTCATATTCCTTTTGGTCTCAACAACTCAAATCAGAACCAACAACAACAACAAGATGGATTCAATCACAATGATGATGCTGATGTTCATATACAACAAGATTGA	1188	0.436	MDDANNKHNKFRNMGVDDDSGAHKVFDEMNDPTLFQWKPLFDEASLLHNRPLKKIRSPQRSSSSSSSSFQQPLPSPSSSSSVPPSSSSRIVFPFAFDPSQQNPMQMQMQFPYQYGTTTTPFMQPTSQNQMISFGSQSHHPQHQHNMNMNTVYQPQMLQQQNQQQILQYWSEALNLSPRGRMMMMNNRLRPPPPQPLNTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKKEEEEAPSDAPTTSSPSSSITTTKQVEEVSEGGNVDKSPMEEENENENSTSVSGEGVSQELVWGEMSAWFNAIPSGWGPGSPVWDDLDTSNNGFLLQPHIPFGLNNSNQNQQQQQDGFNHNDDADVHIQQD	395

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc60821g00001	395	SMART	rav1_2	201	264	IPR001471	GO:0003700\|GO:0006355
	Stsc60821g00001	395	SUPERFAMILY	DNA-binding domain	201	259	IPR016177	GO:0003677
	Stsc60821g00001	395	MobiDBLite	consensus disorder prediction	294	308	-	-
	Stsc60821g00001	395	Gene3D	AP2/ERF domain	201	259	IPR036955	GO:0003700\|GO:0006355
	Stsc60821g00001	395	MobiDBLite	consensus disorder prediction	266	320	-	-
	Stsc60821g00001	395	ProSiteProfiles	AP2/ERF domain profile.	201	258	IPR001471	GO:0003700\|GO:0006355
	Stsc60821g00001	395	MobiDBLite	consensus disorder prediction	366	383	-	-
	Stsc60821g00001	395	Pfam	AP2 domain	202	250	IPR001471	GO:0003700\|GO:0006355
	Stsc60821g00001	395	CDD	AP2	200	260	IPR001471	GO:0003700\|GO:0006355
	Stsc60821g00001	395	MobiDBLite	consensus disorder prediction	366	395	-	-
	Stsc60821g00001	395	MobiDBLite	consensus disorder prediction	51	87	-	-
	Stsc60821g00001	395	MobiDBLite	consensus disorder prediction	56	87	-	-
	Stsc60821g00001	395	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	20	351	-	-
	Stsc60821g00001	395	MobiDBLite	consensus disorder prediction	1	25	-	-
	Stsc60821g00001	395	PRINTS	Ethylene responsive element binding protein signature	224	240	IPR001471	GO:0003700\|GO:0006355
	Stsc60821g00001	395	PRINTS	Ethylene responsive element binding protein signature	202	213	IPR001471	GO:0003700\|GO:0006355
	Stsc60821g00001	395	MobiDBLite	consensus disorder prediction	273	293	-	-
	Stsc60821g00001	395	FunFam	Ethylene-responsive transcription factor 2	200	259	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60821g00001	Stsc-Chr60821	358	2400	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60821g00001	169	350	AP2-EREBP Transcription Factor Family	AT2G20880	58.730	8.46e-65	208

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Stsc60821g00001		AP2	2.5e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60821g00001	-		-	gmx:100101898	330.102