Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60815g00007 ATGTTCTTATTGAGTGTAGAGACGTATACAAGTCATTTGGGGAAAAGAAAATCCTCAATGGTGTTAGCTTCAAGACATGGGGAAGCAGTTGGAATAATTGGTCCATCTGGGACGGGAAAATCTACAGTTTTAAAGATTATTGCAGGATTACTTGTTCCAGATAAGGGTGAGGTTTATATTCGAGGTAGAAAGAGAGTTGGTCTAGTAAGCGATGATGAGCTACATGGTCTTCGAATTGGATTAGTGTTCCAAAGTGCGGCACTTTTTGATTCTTTGACTGTCCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCAAGCATGCCTGAAGACCAGATATCAGAGGTTGTCAAGGAAACGTTGGCTGCTGTCGGATTGAAGGGAGTTGAGAATCGGTTGCCTTCTGAGTTATCAGGTGGAATGAAAAAACGAGTTGCTTTAGCTCGATCTATTATTTATGACAACTCCAAGGATTCAATTGAGCCTGAGGTTCTCTTATATGATGAACCAACTGCTGGACTAGATCCCATTGCATCTACTGTTGTCGAGGATCTAATTCGTTCAGTGCACATAAAAGGACAAGATGCACGTGGGAAACCTGGGAACATTGCATCATATGTGGTTGTCACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGGTTGTTGTTTCTACACAAGGGAAAGGTTGTTTGGGAAGGAATGACGCAGGAATTTACAACATCAACAAATCCAATTGTTCAGCAGTTTGCATCTGGGAGCCTGGAGGGTCCTATCAAATACTAG 789 0.4144 MFLLSVETYTSHLGKRKSSMVLASRHGEAVGIIGPSGTGKSTVLKIIAGLLVPDKGEVYIRGRKRVGLVSDDELHGLRIGLVFQSAALFDSLTVRENVGFLLYEHSSMPEDQISEVVKETLAAVGLKGVENRLPSELSGGMKKRVALARSIIYDNSKDSIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGQDARGKPGNIASYVVVTHQHSTIKRAIDRLLFLHKGKVVWEGMTQEFTTSTNPIVQQFASGSLEGPIKY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60815g00007 262 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 253 IPR003439 GO:0005524
Stsc60815g00007 262 Gene3D - 19 255 IPR027417 -
Stsc60815g00007 262 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 22 262 - -
Stsc60815g00007 262 SMART AAA_5 26 230 IPR003593 GO:0016887
Stsc60815g00007 262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 247 IPR027417 -
Stsc60815g00007 262 ProSitePatterns ABC transporters family signature. 137 151 IPR017871 GO:0005524|GO:0016887
Stsc60815g00007 262 Pfam ABC transporter 24 172 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60815g00007 Stsc-Chr60815 40256 43970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60815g00007 20 235 Calmodulin-binding Proteins AT2G36910 29.956 5.15e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60815g00007 - - gmx:100783283 433.335