Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60815g00006 ATGGTTTCTTTGTCAACAAACCCCTTGTTTTCCCTAACCACCACCCAAAACGCTGCGTCTCGTTCTTCTCATTCGAGATTCGCGCCTTCAACCAAGTTCAATTCTTTCAACGCCAACAATAAAGATCATAGGAAGGTTGTTTGTGCTTGCGTCGCTCCTCCAACAAACTTCAAGAGCGAAGACTCTTCCGCCCTCAGATTCAATGGTTCATCGAAATCGGAGCAATTGAGCACACTGCGGGAACAAGAGGGTGACTCTGATGTTCTTATTGAGTGTAGAGACGTATACAAGTCATTTGGGGAAAAGAAAATCCTCAATGGTGTTAGCTTCAAGATTAGACATGGGGAAGCAGTTGGAATAATTGGTCCATCTGGGACGGGAAAATCTACAGTTTTAAAGATTATTGCAGGATTACTTGTTCCAGATAAGGGTGAGGTTTATATTCGAGGTAGAAAGAGAGTTGGTCTAGTAAGCGATGATGAGCTACATGGTCTTCGAATTGGATTAGTGTTCCAAAGTGCGGCACTTTTTGATTCTTTGACTGTCCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCAAGCATGCCTGAAGACCAGATATCAGAGGTTGTCAAGGAAACGTTGGCTGCTGTCGGATTGAAGGGAGTTGAGAATCGGTTGCCTTCTGAGTTATCAGGTGGAATGAAAAAACGAGTTGCTTTAGCTCGATCTATTATTTATGACAACTCCAAGGATTCAATTGAGCCTGAGGTTCTCTTATATGATGAACCAACTGCTGGACTAGATCCCATTGCATCTACTGTTGTCGAGGATCTAATTCGTTCAGTGCACATAAAAGGACAAGATGCACGTGGGAAACCTGGGAACATTGCATCATATGTGGTTGTCACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGGTTGTTGTTTCTACACAAGGGAAAGGTTGTTTGGGAAGGAATGACGCAGGAATTTACAACATCAACAAATCCAATTGTTCAGCAGTTTGCATCTGGGAGCCTGGAGGGTCCTATCAAATACTAG 1053 0.4274 MVSLSTNPLFSLTTTQNAASRSSHSRFAPSTKFNSFNANNKDHRKVVCACVAPPTNFKSEDSSALRFNGSSKSEQLSTLREQEGDSDVLIECRDVYKSFGEKKILNGVSFKIRHGEAVGIIGPSGTGKSTVLKIIAGLLVPDKGEVYIRGRKRVGLVSDDELHGLRIGLVFQSAALFDSLTVRENVGFLLYEHSSMPEDQISEVVKETLAAVGLKGVENRLPSELSGGMKKRVALARSIIYDNSKDSIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGQDARGKPGNIASYVVVTHQHSTIKRAIDRLLFLHKGKVVWEGMTQEFTTSTNPIVQQFASGSLEGPIKY 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60815g00006 350 Gene3D - 76 343 IPR027417 -
Stsc60815g00006 350 SMART AAA_5 114 318 IPR003593 GO:0016887
Stsc60815g00006 350 ProSitePatterns ABC transporters family signature. 225 239 IPR017871 GO:0005524|GO:0016887
Stsc60815g00006 350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 331 IPR027417 -
Stsc60815g00006 350 Pfam ABC transporter 105 260 IPR003439 GO:0005524
Stsc60815g00006 350 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 16 350 - -
Stsc60815g00006 350 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 90 341 IPR003439 GO:0005524
Stsc60815g00006 350 CDD ABC_Org_Solvent_Resistant 90 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60815g00006 Stsc-Chr60815 40256 44033 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60815g00006 96 323 Calmodulin-binding Proteins AT2G36910 29.707 1.29e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60815g00006 - - gmx:100783283 572.778