Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60814g00003 ATGGGTGATGAGAATGTGATTCCTGATCTTTCACTTCACATTAGCCTCCCAAACACAAACAGTGCTCCATCTTCAATATGCAATAACAATGAAGAAGGGGATTCTTGTGGAGGATTTGATATATGGAGAAGTAGCAGTGAAGAAGGAATCAATAAATCTCACAGTGATGGTTCTGCTTCCATTTCAATCCCTCATCATCATCATAAAGTGGAGCAGACACAACTCTCTTTATTATCCGCAACCACTACTACTCCTTCTGAAGCTGAAAGCCCTTGGAGAATCAGAACCCAAACAAATCATCATCATCATGATGCTGGTGGTTTTGGTGTTGCTGGGGTTTCATCATCATCAGCAGTAATTAGGCCTATGATCAACGGAGTCCCTCTTTACCCTTCTTCTAATTCTTGTGGAGAATCTCCTCCTTCACCACTTTCAAGGTTTAATGCTATAACCATGGAGAATCTAAGACCCCTTAATCATCATCAGTTATTTGGGGGGCCCGGGAACAACAACAACTGCGGTTGTGATTTCACAAACGGGTTCGTGATGAGGTCAAGAATGTTTCCATCATCGACAACAAGGATGACAACCATGATTCATAGCAGCAAGAGGAACATGAGGGCTCCCAGAATGCGTTGGACAACCTCCCTCCATGCTCGATTTGTTCATGCCGTTGAGCTTCTTGGCGGCCATGAAAGGGCTACTCCAAAGTCAGTTCTGGAGCTCATGGATGTCAAAGATCTAACACTGGCTCATGTCAAGAGTCACTTGCAGATGTATAGAACTGTTAAGAATACTGACAAGCCAGCAACTTCATCAGATGCAGATGAAGATTTCATGTCCCTAGCAGCATCACCCCTTAGTCAAAATAAGAACTTTTCACCAAATCATCAAAGGGGCCCCCCATCAAATAATGCATCTTTAGATCAGGATTTGGGATACAACACCACTAATACTACTTGCAGCAACAATCTATGGGGTAATTCTTCTTCCAGTAGAGGAGCATGGATACAAGCCAATGAGTTTAATCCAGAAACCCTATCATCTTCTCAGCACATAATTGGGAAGCTCTCCGAGGGAAGCAACCATATACAATCAAGAAACTTCAAGGATCAAAATAATTTAGATTGTCATCATCAGAATCCAAGCTTGGAATTCACATTAGGGAGATGA 1173 0.4246 MGDENVIPDLSLHISLPNTNSAPSSICNNNEEGDSCGGFDIWRSSSEEGINKSHSDGSASISIPHHHHKVEQTQLSLLSATTTTPSEAESPWRIRTQTNHHHHDAGGFGVAGVSSSSAVIRPMINGVPLYPSSNSCGESPPSPLSRFNAITMENLRPLNHHQLFGGPGNNNNCGCDFTNGFVMRSRMFPSSTTRMTTMIHSSKRNMRAPRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPATSSDADEDFMSLAASPLSQNKNFSPNHQRGPPSNNASLDQDLGYNTTNTTCSNNLWGNSSSSRGAWIQANEFNPETLSSSQHIIGKLSEGSNHIQSRNFKDQNNLDCHHQNPSLEFTLGR 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60814g00003 390 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 390 IPR044847 GO:0000976|GO:0006355|GO:0010158
Stsc60814g00003 390 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Stsc60814g00003 390 MobiDBLite consensus disorder prediction 367 381 - -
Stsc60814g00003 390 FunFam Myb family transcription factor 207 265 - -
Stsc60814g00003 390 MobiDBLite consensus disorder prediction 287 314 - -
Stsc60814g00003 390 SUPERFAMILY Homeodomain-like 206 263 IPR009057 -
Stsc60814g00003 390 Gene3D - 208 265 - -
Stsc60814g00003 390 MobiDBLite consensus disorder prediction 367 390 - -
Stsc60814g00003 390 NCBIfam myb-like DNA-binding domain, SHAQKYF class 209 262 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60814g00003 Stsc-Chr60814 36754 45442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60814g00003 182 390 G2-like Transcription Factor Family AT5G16560 50.000 1.55e-47 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc60814g00003 Myb_DNA-binding 1.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60814g00003 - - aip:107644092 519.62