Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60813g00005 ATGGATCCAAAAGTGAGCCTGTGTTCTAACAACTGGGCTAGGTCCTCTCCCGGGAGCGGATTGCAGACAAACATGTCATCGGATCCATCCGCTTTGTTTGGCATTCGGATTGAAGCGCCTTTCAAAGACTTCAACCAACCCTCTACTAACCAGTCTTTGCTTCTGGGGGAACCAAACAAGGATGTTAAGATTTCTGATATAGAAAACTGTCAAATGACTGACTCGTCATTGCAAACTGGTAAGCTTCAAGAGTGGGATCCCCATGTGATGTTGAATAGCCTTTCCTTTCTGGAAGACAAGATTCATCAGCTCCAGGATCTTGTTCATATGATTGATAATAAGAAGTGTCAACCTTTTGCGCAACCTGATGCGCTTGTGACACAGGAGCAGCAGCTCATCACAGCCGATCTTACATCAATTATTGTTCAACTGATCTCTACTGCCGGTAATCTTCTCCCGTCCGTTAGGCACACTCTTGCAAACACGAGTCCATTGATCAGTCAGCTTAGCCAGCTTCGCGGGCTTAACCTTCCCTTCGGATCAGGCCCCAGTGGTGGTATTCAGCCGCAAAATAATAATGTAAATAAAATGTTTGATCAGTCCACTCAGAATGATGTACCTAATAACTGTGAAATGGAGCAAAACAACAACATGGAAGAGCATGAAACAAAAGATGAAGAAGATGTGGAGGAGGGAGAGAATCTTCCACCCGGTTCCTACGAGATTTTGCAGTTAGAGAAAGAAGAAATCCTTGCACCCCATACACATTTCTGTACGATTTGTGGGAAGGGGTTCAAGAGGGACGCGAATCTTCGCATGCATATGCGGGGACACGGGGATGAGTACAAAACACCAGCGGCTCTTGCAAAGCCCCATAAAGAAACTGGATCCGAACCAAAGCTCATCAAGAGGTATTCATGTCCTTATGCCGGCTGCAAGCGAAATAAGGATCACAAGAAGTTCCAACCTCTAAAGACTATTTTATGTGTCAAAAACCACTACAAGAGGACACACTGCGACAAGAGTTACACTTGTAGCAGATGTCACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCACGAAAAGCACTGTGGTAAGGACAAATGGCTCTGTTCGTGTGGTACAACATTTTCAAGGAAGGACAAGCTTTTTGGACACATTGCTCTTTTCCAAGGCCATACACCGGCAATTCCTTTGGAAGAAACTAAAGCACCAGCCGTTCCGGCCGAACTCGACAGCAAAGATAACAACTGTGATAAGGTTGGAAGTATGAACTTCTGTTTCGGATCAGATCCTCCAAATGAAAGTGAAGTTCAAAACATCATGGATGTGAAGGGTAACATTGATGATCCAATTAATTATTTCTCATCATTGAACTTTGAAGGATGCAACTTTGGTGGGTTTAATGAATTCTCTCAGTCTCCTTTTGAAGATTCAGATGCTTCTTTCTCATTCCTTATGTCTGGATCTTTTAACTATGCTCCTAAACCAGGAGGTGAATCAACTTCTGATAATCTGTAG 1527 0.4361 MDPKVSLCSNNWARSSPGSGLQTNMSSDPSALFGIRIEAPFKDFNQPSTNQSLLLGEPNKDVKISDIENCQMTDSSLQTGKLQEWDPHVMLNSLSFLEDKIHQLQDLVHMIDNKKCQPFAQPDALVTQEQQLITADLTSIIVQLISTAGNLLPSVRHTLANTSPLISQLSQLRGLNLPFGSGPSGGIQPQNNNVNKMFDQSTQNDVPNNCEMEQNNNMEEHETKDEEDVEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEETKAPAVPAELDSKDNNCDKVGSMNFCFGSDPPNESEVQNIMDVKGNIDDPINYFSSLNFEGCNFGGFNEFSQSPFEDSDASFSFLMSGSFNYAPKPGGESTSDNL 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60813g00005 508 MobiDBLite consensus disorder prediction 8 25 - -
Stsc60813g00005 508 SUPERFAMILY beta-beta-alpha zinc fingers 254 281 IPR036236 -
Stsc60813g00005 508 ProSitePatterns Zinc finger C2H2 type domain signature. 258 278 IPR013087 -
Stsc60813g00005 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 283 IPR013087 -
Stsc60813g00005 508 Gene3D Classic Zinc Finger 240 310 - -
Stsc60813g00005 508 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 77 480 IPR044300 GO:0010044|GO:0010447
Stsc60813g00005 508 MobiDBLite consensus disorder prediction 1 25 - -
Stsc60813g00005 508 SMART c2h2final6 256 278 IPR013087 -
Stsc60813g00005 508 SMART c2h2final6 305 338 IPR013087 -
Stsc60813g00005 508 SMART c2h2final6 343 365 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60813g00005 Stsc-Chr60813 20903 23543 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60813g00005 224 506 C2H2 Transcription Factor Family AT1G34370 70.934 6.12e-143 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc60813g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60813g00005 - - gmx:100170687 804.668