Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60812g00003 ATGCTTGATTATGCACTTCAGAATGTCATTTCGAAGCTAGCACCAGCTCAAAGGCAAAGAGTTTCACTTCTAGTAGAAGCTTTCGAAACAATTCTTCCATTTCAAGATTCTCAAAAAGCCCCATTGTCTTCTGCAATAATTGAGACTCGGGCCAATCCTGTTCAGTCAATTGATGACTCCTCTGATCACTGCAAGGAAGAAACAGAAAAAGATAATTCTTGTTATGATTCAATGCCTGAAATGGACAATCATGTTGTGCTTAAAGAAAGATGTCTTGACAATCTTGGGTCCAAGGCAGTTGAGAATATGCCTGAATCTGGAGCTGTTGAAGAAAAGCCAAATGCCACACACCATGAGGAGGCTCCATTCAATGAGGTAGTCAGTGAAATTCCAGAAGAGTCAGAGTCAATGCCGGAACAATCGAAAAGTTTTATACTAAAAGGTCTTGCCAGGTCACTTGGAACTAATTTCGTTGGTTCAGAACCTTCACACCAATTAGACGAAGCGAAAACAGACATAGAAGAAAGGACAGAGAAAGCTAATATCCGTATGCATGAGCAATCTGAAGATCCTAATAACTCAGGACTATGGTTCTTGGTGTATAAGCACATGGTATCCGGTTCAGCAGAAAATGATTCCAAGTCAGTAATTGATGGGGCAGATGGGAAAGAATCAGAGTATGAAAAGTCAAGAGACACCTCAGTTTCATACGAAAGTACACCAATGATGAATCAAGATATGGACATCAAGGATCATGGTAGTGTAGCTGACAGAGAAGTTGAACGCCAACAGCTTGAAGCCATCAAGATGGTAGAAGAAGCAATTGATTCAATTGATTTAGACGACGACTCCAAACTATCCAACGGTGCTGAAAGAGTGTTCAACAAAGACAACCATAAGGAACCTAGGATGGCATCTGGAAATGGAATAACTGAAAAACCCGAAAAGGAAGATCAAACGGAATCAAAGGAAGGAAACAACCCGGACAGGAAATTACCTAGAAGCTGGAGCAATCTTAAAAAGGTGATCCTGCTTAGGAGATTCATCAAGTCATTGGAAAAGGTGAGAAAATTCAACCCAAGAGGGCCTAGATATTTGCCAATAGAGCCTGATCCTGAAGCCGAAAAGGTTAACTTAAGGCATCAAGACATAGCAGGAAGGAAAGGCACAGAAGAATGGATGCTTGATTATGCTCTTCGACAGGTTGTTTCGGAACTTACCCCTGCTCGAAAAAGAAAGGTGGGGCTGCTAGTGGAAGCTTTTGAAACAGTCATGCCAACCATGAAAAACTGA 1293 0.4138 MLDYALQNVISKLAPAQRQRVSLLVEAFETILPFQDSQKAPLSSAIIETRANPVQSIDDSSDHCKEETEKDNSCYDSMPEMDNHVVLKERCLDNLGSKAVENMPESGAVEEKPNATHHEEAPFNEVVSEIPEESESMPEQSKSFILKGLARSLGTNFVGSEPSHQLDEAKTDIEERTEKANIRMHEQSEDPNNSGLWFLVYKHMVSGSAENDSKSVIDGADGKESEYEKSRDTSVSYESTPMMNQDMDIKDHGSVADREVERQQLEAIKMVEEAIDSIDLDDDSKLSNGAERVFNKDNHKEPRMASGNGITEKPEKEDQTESKEGNNPDRKLPRSWSNLKKVILLRRFIKSLEKVRKFNPRGPRYLPIEPDPEAEKVNLRHQDIAGRKGTEEWMLDYALRQVVSELTPARKRKVGLLVEAFETVMPTMKN 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60812g00003 430 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 1 33 IPR044681 GO:0005516
Stsc60812g00003 430 SMART CaM_binding_2 312 426 IPR012417 GO:0005516
Stsc60812g00003 430 MobiDBLite consensus disorder prediction 310 333 - -
Stsc60812g00003 430 MobiDBLite consensus disorder prediction 209 247 - -
Stsc60812g00003 430 MobiDBLite consensus disorder prediction 281 303 - -
Stsc60812g00003 430 MobiDBLite consensus disorder prediction 59 77 - -
Stsc60812g00003 430 MobiDBLite consensus disorder prediction 56 77 - -
Stsc60812g00003 430 MobiDBLite consensus disorder prediction 281 333 - -
Stsc60812g00003 430 MobiDBLite consensus disorder prediction 216 233 - -
Stsc60812g00003 430 Pfam Plant calmodulin-binding domain 1 33 IPR012417 GO:0005516
Stsc60812g00003 430 Pfam Plant calmodulin-binding domain 321 426 IPR012417 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60812g00003 Stsc-Chr60812 27000 29832 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60812g00003 1 45 Calmodulin-binding Proteins AT5G04020 55.319 1.72e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60812g00003 - - aip:107645531 632.484