Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60810g00005 ATGGCTTCCAAGTTATGTGATTCCTGCAAGTCCGCCACCGCCACCGTCTACTGCCGCCCCGACGCCGCCTTCCTCTGCTCCCCCTGCGACTCCAAAGTCCACGCCGCTAACAAGCTCGCCTCCCGCCACCCTCGCGTCTCACTCTGCGAGGTCTGCGAGCAGGCACCTGCTCACGTCACCTGCAAGGCCGATGCTGCTTCCCTCTGCCTCGCCTGCGACCGCGATATCCACTCCGCCAACCCTCTCGCTTCCCGCCACGAGCGAATCCCTGTCACTCCTTTCTACCACTCGCTCGCCGCTACCGTCAAGTCTCCGGTCAACTTCCTCGATGATCACCGGTTCTTCTCCGACGCCGATGCTGATGCCGATGTTGACGTCAGCACTGAGGAGGCCGAGGCTGCTTCCTGGCTCCTTCCTACGCCTTCTAACCCTTCCAAGGCAGATCCGAACTCGTGTCAGTACATGTTCCAGGAGATGGAACAGGTTCCCTATGTAGATCTGGATTGCGGCAACGCGGATCCGAAATCGGAGCAGAAGAGCTCCGCCACCACCGACGGTGTTGTTCCGGTGCAGAGCAAGACCGCCAACGAGCACTACTTTGAGCCTTTCGCCTACGGCGGCTACAAGTACAACTCGCAGTCTCAGTCACAGTCACAGATGAGCCATAGCGTGTCGTCGTCGTCGATGGAGGTTGGTGTGGTGCCGGACGGGAACGCGATGTCTGAGATATCGAACTGCAAGGTAGCGACGGCGGTGGAGGGAGGGAACCAGGCGGTGACGGTGCCGGCGCAGTTCTCGGCGGCGGATAGGGAAGCTAGGGTTTTGAGGTATAGGGAGAAGAGGAAGAATCGAAAGTTCGAGAAGACTATTCGGTACGCTTCTCGTAAAGCTTATGCAGAAACGAGGCCAAGGATCAAAGGAAGATTCGCCAAGCGCACTGAAGTTGACCCTCTCAACGGATACGGCGTCGTTCCGTCCTGTTAA 984 0.5874 MASKLCDSCKSATATVYCRPDAAFLCSPCDSKVHAANKLASRHPRVSLCEVCEQAPAHVTCKADAASLCLACDRDIHSANPLASRHERIPVTPFYHSLAATVKSPVNFLDDHRFFSDADADADVDVSTEEAEAASWLLPTPSNPSKADPNSCQYMFQEMEQVPYVDLDCGNADPKSEQKSSATTDGVVPVQSKTANEHYFEPFAYGGYKYNSQSQSQSQMSHSVSSSSMEVGVVPDGNAMSEISNCKVATAVEGGNQAVTVPAQFSAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEVDPLNGYGVVPSC 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60810g00005 327 ProSiteProfiles CCT domain profile. 270 312 IPR010402 GO:0005515
Stsc60810g00005 327 Pfam CCT motif 270 312 IPR010402 GO:0005515
Stsc60810g00005 327 CDD Bbox1_BBX-like 5 48 - -
Stsc60810g00005 327 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Stsc60810g00005 327 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 314 IPR045281 GO:0009909
Stsc60810g00005 327 SMART bboxneu5 49 91 IPR000315 GO:0008270
Stsc60810g00005 327 SMART bboxneu5 1 48 IPR000315 GO:0008270
Stsc60810g00005 327 CDD Bbox1_BBX-like 48 91 - -
Stsc60810g00005 327 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Stsc60810g00005 327 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Stsc60810g00005 327 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60810g00005 Stsc-Chr60810 44111 45508 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60810g00005 1 326 C2C2-CO-like Transcription Factor Family AT5G24930 56.284 3.69e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Stsc60810g00005 zf-B_box 5.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60810g00005 - - gmx:100794431 467.233