Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60807g00003 ATGGAGAAATACGAGGCTGTGAAGGATTTGGGAGCTGGGAATTTCGGTGTTGCCAGGCTCATGAGGAACAAGGTCACCAAGGAACTCGTCGCCATGAAATACATCGAGCGTGGCCGCAAGATTGATGAGAACGTGGCTAGAGAGATAATCAACCACAGGTCCCTTAGGCATCCCAATATAATTCGTTTCAAGGAGGTGGTGTTGACTCCCACGCATTTGGCGATAGTAATGGAATATGCTGCCGGAGGAGAACTCTTCGAGAGGATATGCAGTGCTGGCAGGTTCAGTGAAGACGAGGCTAGATATTTCTTTCAGCAGCTGATATCCGGTGTCCATTTCTGTCATAATATGCAAATATGCCACAGAGATTTGAAGCTAGAAAATACCCTTTTAGATGGAAGTCCAGCACCTCGCCTAAAAATTTGTGACTTCGGTTATTCCAAGTCATCTTTGCTGCATTCACGACCCAAATCAACTGTTGGAACACCAGCTTATATTGCACCAGAGGTTCTTTCTAGGCGAGAGTATGACGGCAAGATGGCTGATGTGTGGTCATGTGGAGTGACTCTTTATGTCATGTTGGTTGGAGCATATCCCTTCGAGGACCAGGACGATCCTAGGAATTTCAGGAAAACAATTCAGCGTATAATGAGTGTTCAATACAAAATCCCGGATTATGTTCACATATCTCAGGATTGTAGACAACTCCTCGCTCGTATATTTGTTGCAAATCCATTGAGGAGAATTACACTCAAGGAAATTAAGAACCACCCATGGTTTTTAAAAAATCTTCCAAGAGAGCTAACTGAACCGGCTCAAGCTATCTATTACCAGAGAGACAATCCAAGTTTTCATGTTCAAAGTGTGGAGGAGATAATGAAAATTGTGGGAGATGCGAGAAACCCACCGCCAGTATCTAGGCCTGTCAAAGGTTTTGGCTGGGAGGGCGAAGACGATGAAGGCGCAGAAGAAGAAGAGGTGGAAGAAGAAGTAGAGGAAGTAGTTGAGGAAGAAGAGGAAGAAGATGAGTATGATAAGAGGGTCAAAGAGGTTCATGCAAGTGGACAATTTCAAATTAGTTAA 1083 0.4423 MEKYEAVKDLGAGNFGVARLMRNKVTKELVAMKYIERGRKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVHFCHNMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKMADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMSVQYKIPDYVHISQDCRQLLARIFVANPLRRITLKEIKNHPWFLKNLPRELTEPAQAIYYQRDNPSFHVQSVEEIMKIVGDARNPPPVSRPVKGFGWEGEDDEGAEEEEVEEEVEEVVEEEEEEDEYDKRVKEVHASGQFQIS 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60807g00003 360 SUPERFAMILY Protein kinase-like (PK-like) 2 295 IPR011009 -
Stsc60807g00003 360 PANTHER SERINE/THREONINE KINASE 2 323 - -
Stsc60807g00003 360 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Stsc60807g00003 360 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Stsc60807g00003 360 Coils Coil 317 347 - -
Stsc60807g00003 360 MobiDBLite consensus disorder prediction 306 360 - -
Stsc60807g00003 360 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Stsc60807g00003 360 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60807g00003 360 CDD STKc_SnRK2 3 259 - -
Stsc60807g00003 360 Gene3D Transferase(Phosphotransferase) domain 1 80 267 - -
Stsc60807g00003 360 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
Stsc60807g00003 360 MobiDBLite consensus disorder prediction 317 344 - -
Stsc60807g00003 360 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60807g00003 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Stsc60807g00003 360 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60807g00003 Stsc-Chr60807 20811 24332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60807g00003 3 281 CBL-interacting serine-threonine protein kinases AT4G24400 41.667 5.80e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Stsc60807g00003 Pkinase 5e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60807g00003 K14498 - gmx:547811 635.18