Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc607g00003 ATGGTGGCAAGATCATACGCCAATTTGTTGGACTTAGCTTCGGGGGATATTTTAAATATCCCTCAAACTCCAAGAGCACTTCCGCGAGTTATGACTGTTCCTGGAGTTCTCTCTGATGTAGAAAGCAAGCAAAGCAGTGAGGATGGTTCCCAGTCAGATCAGCGTCAGAAGATAATTATTGTAGCAAATTTTCTTCCTCTCAATGCTAGCAAGGACAAGTCTTCTGGAAAATGGAGCTTCAGTTATGACAAGGATTCGATTTTTTGGCAGTTAAAAGATGGTCTCCCTCCTGATGTTGATGTTGTTTATGTTGGATCTCTGACGGTTGATGTTGATGCTGGTGAGCAAGAGCAAGTTTCTAATCAGTTGCTGGAGGAATTCAAATGTGTGCCTGCTTTTCTTCCTCCAGAAATCGAGGAACAGTTCTATAATGGATTCTGCAAGCAACATTTATGGCCCCTATTCCATTACATGTTGCCAATGTATCCGGGTTATAGCAATCGCTTCGATAGGACACTGTGGCAGGCTTATGTTTCGGTCAATAAGATATTTGCAAATAAAGTCACTGAGGTCATTAACCCGGACATAGATTATGTATGGGTTCATGATTACCAATTAATGATTCTTCCGACATTTCTGCGAAAGCGTTACAGCAGGATCAAGCTTGGTTTCTTCTTGCATAGTCCCTTTCCTTCATCTGAGATTTATCGAACTCTGCCGGTCAGAGGTGAAATTTTGAAAGCTCTGCTGAATGCAGATTTAATTGGTTTTCACACATTTGATTATGCTCGCCATTTTCTCTCCTGCTGCAGTCGAATGCTTGGCTTAGAATATGAGTCCAAAAGAGGCTACATTGGGCTCGAGTACTTCGGCCGGACAATATACGTCAAAATATTACCAGCTGGGATTCATATGGGCAGACTTCAATCTGTCTTAGATCATTCTTCTTCTACTGCCAAAGCAAGAGAAATCTGTGAGCAATTTAAGGGGAAACGACTTATAGTTGGTGTCGACGATATGGACATCTTTAAAGGTATAAGTTTAAAGCTCTTGGCCCTTGAACAACTGTTAGAGGCATATCCAACACTACGGGGTGAATTGATTATGGTCCAAATCTTGAATCCACTGAGGGGTTCTAGCAAAGATATTGAGGATGCAAAGGAGGAGGCATACATCACTGCTAACAGGATAAATAAAACTTTTGGTTTTCCAGGCTATGAACCTGTTATCATCATTGATCGCCATGTTCATTTCTACGAGAAGGCAGCCTATTATGCTATGGCAGAATGTTGCATTGTGAATGCGTTGCGCGATGGAATGAACTTGGTTCCATACAAGTACATTGTCTGTAGGCAGGGAAGTCCCCAAATGGATGAAGCTTTGGGAATTGACCATGACTCTCCGCGGACAAGTGCACTTGTTGTTTCTGAGTTTATAGGTTGCTCCCCATCTCTCAGTGGAGCAATCAGGGTGAATCCGTGGGACATTAGCGCTGTAGCCGAAGCTTTGTATTTAGCCATCACTATGCCTGATGATGAGAAGAAGTTGCGACACGAGAAGCACTATCGATACGTTAGTTCTCATGATGTGGCTTACTGGGCCAAAAGTTTTGAACAAGATCTTGTGATGTCGTGTAAGGATCACCGTAATGAAAACCGCTGGGGCCTTGGCTTTGGCCTGAATTATCGGGTCTTGTCTCTTTCTCCCGATTTCAGGAAGCTGTCTAATGACCACATTGTCTCTGCCTATAAACGGTCAAATCATAGAGCAATCTTTTTGGATTATGATGGAACAGTTGTACCTCAATCTTCCATTGATAAATCCCCCAGTCCTCAGGTTATATCCGTGCTGAACGATCTTTGCAGTGATCCTAACAATACAGTGTTTATTGTCAGTGGCCGCGGGAAAACCTCATTGGGTGAATGGTTTGATCAATGTAAGAGTCTTGGTATCGCGGCCGAGCATGGCTATTTTATCAGGTGGGGTAACCAGTCAAGCTGGCAAATGAGTCACACAAGTACAGATTTTTCTTGGAAAAAGATTGCTGAACCTGTGATGAGATCGTATATGGAAGCCACTGACGGCTCCTATATAGAGACCAAAGAGAGTGCCTTGGGTATTACTAAAGGGCTAGTTGCGCAAGACGTTTTGTCTACGCTAGCCGGTGCTGGGAAATCCCCAGAATTTGTGCTGTGCATTGGGGATGACAGATCTGACGAGGACATGTTCGAGAGCATATTAACTAAATCCTATAATGCAAACACCTGTGCAGCACCAGAAATCTTTGCGTGTACCGTTGGGCAGAAACCGAGCAAGGCGAGGTACTACCTAGACGATACTGTCGAGGTGACAATGCTACTTGAAGCTCTTAGTACTGCTTCAGAGCTTCTAACAACGCTTTCTGGAAGAGCTCCTCCTCAAAATGCAGAATCTTGCTTTGAGAATATTGGTTGA 2454 0.4348 MVARSYANLLDLASGDILNIPQTPRALPRVMTVPGVLSDVESKQSSEDGSQSDQRQKIIIVANFLPLNASKDKSSGKWSFSYDKDSIFWQLKDGLPPDVDVVYVGSLTVDVDAGEQEQVSNQLLEEFKCVPAFLPPEIEEQFYNGFCKQHLWPLFHYMLPMYPGYSNRFDRTLWQAYVSVNKIFANKVTEVINPDIDYVWVHDYQLMILPTFLRKRYSRIKLGFFLHSPFPSSEIYRTLPVRGEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYESKRGYIGLEYFGRTIYVKILPAGIHMGRLQSVLDHSSSTAKAREICEQFKGKRLIVGVDDMDIFKGISLKLLALEQLLEAYPTLRGELIMVQILNPLRGSSKDIEDAKEEAYITANRINKTFGFPGYEPVIIIDRHVHFYEKAAYYAMAECCIVNALRDGMNLVPYKYIVCRQGSPQMDEALGIDHDSPRTSALVVSEFIGCSPSLSGAIRVNPWDISAVAEALYLAITMPDDEKKLRHEKHYRYVSSHDVAYWAKSFEQDLVMSCKDHRNENRWGLGFGLNYRVLSLSPDFRKLSNDHIVSAYKRSNHRAIFLDYDGTVVPQSSIDKSPSPQVISVLNDLCSDPNNTVFIVSGRGKTSLGEWFDQCKSLGIAAEHGYFIRWGNQSSWQMSHTSTDFSWKKIAEPVMRSYMEATDGSYIETKESALGITKGLVAQDVLSTLAGAGKSPEFVLCIGDDRSDEDMFESILTKSYNANTCAAPEIFACTVGQKPSKARYYLDDTVEVTMLLEALSTASELLTTLSGRAPPQNAESCFENIG 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc607g00003 817 FunFam Alpha,alpha-trehalose-phosphate synthase 311 526 - -
Stsc607g00003 817 Pfam Trehalose-phosphatase 592 705 IPR003337 GO:0003824|GO:0005992
Stsc607g00003 817 Pfam Trehalose-phosphatase 706 779 IPR003337 GO:0003824|GO:0005992
Stsc607g00003 817 Gene3D Glycogen Phosphorylase B; 49 309 - -
Stsc607g00003 817 Pfam Glycosyltransferase family 20 57 541 IPR001830 GO:0003824|GO:0005992
Stsc607g00003 817 Gene3D - 588 799 IPR023214 -
Stsc607g00003 817 SUPERFAMILY HAD-like 589 790 IPR036412 -
Stsc607g00003 817 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 28 705 IPR001830 GO:0003824|GO:0005992
Stsc607g00003 817 CDD GT20_TPS 57 541 IPR001830 GO:0003824|GO:0005992
Stsc607g00003 817 Gene3D Glycogen Phosphorylase B; 310 526 - -
Stsc607g00003 817 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 588 705 - -
Stsc607g00003 817 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 57 541 - -
Stsc607g00003 817 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 50 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc607g00003 Stsc-Chr607 20992 24317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc607g00003 1 794 Trehalose Biosynthesis Gene Families AT1G23870 62.130 0.0 1115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc607g00003 K16055 - gmx:100812031 1248.8