Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60799g00003 ATGAGTGCCCTTCATATCATGACTTCATCTACGTCTTCATCTTCATCTCAGATAAAATACGACGTCTTCATCAGTTTTAGAGGTTTAGACACTCGTCATGGTTTTCTCAGCCATTTGCTTAAGGCATTAAGGGAGAAACAAATTGATGCATATGTGGATGACAAGCTTAAAGAAGGAAATGAGTTATTGCCTGCTCTTCTTACAGCAATTGAGGAATCACAGATTGCATTGGTTATATTCTCCAAAGATTATGCCTCTTCAAAGTGGTGTTTAGAGGAGCTTGTCAAAATAACAGAATGCATGGCAAAGAGTTGGCAAATTGTAGTACCCATCTTCTACAATGTAGATCCATCGGATGTGCGGCATCAAAAGGGGTGCTACAAAAGTGCATTTGCTGATCATGAAAAATCTTTCAAAGACAACATCATGAATGTACAAAACTGGAAACTTGCCTTAAAGAGAGTTGCCAATTTATCAGGATTTCATTCCACAATTTTTGGGACTGAAGCTGAACTTATTGAGAGAGTTGTACAACGTGTGTTAACAAGGTTGAATTACATACCCCAAATTGAGTTAAAAGGTCTTATTGGAATCGACAAACCAATTGCAGAGCTTCAATCATTGATCTCTTGCAATGCAGCAAAAGATGTTCATATCATAGGAATTTGGGGTATGGGTGGCATTGGTAAGACAACTATAGCCAGTGCTTTATTTAATATATTATGCTCTGAATTCGAAGGTTGCTGTTTTCTACCAAATGTCAGAGAACAATCAGAGAAGAATGGGATAACCCAATTAAGGGATAAACTTCTTTCCATATTGTTAGAGGAAAAAGATCTAAGCATTGGTGCTAGTGGGGTACCAACTCATGTTTTGAGAAGGCTCGGTCGCAAGAAGATTCTTGTTGTTCTCGACGATGTTAATAATCCAGATCATGTTCAAGACTTGGTTGGAGGACATGAATGGTTCGGTCGAGGTAGCAGAATCGTCGTCACAACTCGAGACAAGCATGTCATTTGTAAAGAAGCTGATGATATTTACCAAGTCGGGGTTTTGGAACACCATGAAGCTTTGCAACTTCTAAATTTGCATGCCTTTAACGGAAGCAGCCTCGAGCTGAATCAGCACAATGATCTTATGACAAGAGTGGTTGATTATGCCAAGGGAATCCCATTAGCATTGAAGGTGTTGGGGACTTTTCTTTATGGAAAAAGTGATGAAGAATGGGAAAGTCAGTTGCAAAAGCTTCAGAAAATGTCATTCAAAGAAATCCAGAATGTTTTGAGATTGAGTTACGAGGGACTAGATCGAGAAGAAAGCAACATATTTTTATATATTGCTTGTTTTTTCGAAGGGCATGATAACATTAAGATTTTGCTAGATGCATGTGGTTACTCAACAGCTATTGCTTTGAAAACTCTTCATGATAGAGCTCTGATAATTGTTTCAAAAGATGGAAAGCATGTAACCATGCATGATTTGATTCGAGAAATGGGTCGAGAAATTGTTCGTGCACAAAATATTGACAAGTTTGGGGAACGAAGTCATTTATGGGATCCTACTGAGATAACTCAAGTATTAAAGCAGGACCAGGGGACTAATCGAATTGAAAGCATAACGTTCAACATGTCAAGTGCTCCTCATCTGAGTTTAAGTCGTCATTCCCTTTCTAAAATGAGGAATCTAAACTTTCTGAGATTCTATTCACATGATACATATAGGGTAAACCTTCCAGAAGGGCTTGAAAATTTGCCAGATAAATTAAAACTTTTTCACTGGGATGATTACCCTTTGCAATCCTTACCCACCAAATTCAATGCAGAGAATCTTGTTGAATTTGATATGCAAGGAAGTTACGTCAAAAAGCTTTGGGAAAACGTACAGAACATAGCAAATCTAAGACGCATTGATCTTGATGGATCCAAGGAATTGGTAGAGCTTCCAGACCTCTCTAAAGCCTCAAATCTTGAAACATTATCACTCTCTGACTGTGAAAATTTGCGCTCTCTTCATCCATCTATTTTCTCCCTCCAAAAACTAATTTATGTGGACTTACAGGGTTGTATAAGATTGAAGAAACTCCCAGATAAGTGCAGCAGAAGCAGCAAGGTTGAACACTTAAACCTGTCAGGATGCAAGAGTCTAAAGCATCTTCCAGATAGCATATCCAAATTGGAATTTCTCAAAGAGCTTTACCTTGAAGGATGCCAGCAACTTGACACATCAAACCTACACATCTTGTTTAGTGGGTTATCATCATTAGAAAGGCTAAACTTGGGTGCATGTCATAACTTAGATAAACTACCAGACAATGTCAACAACTTATCATTGCTATGTTGGTTATCACTTAAGGAAACTAATCTGAAGAGCTTGCCAGAAAGCATCAAACACCTTCGAAAGCTGAGATCACTCTACTTAGGTAGTTGCAGGATGCTTCAATCATTGCCTGAGCTTCCACCTTTTATACAATACTTGGAAGTGAGTGATTGCATAGCCTTGGAGACAGTGTTCACTCCAACCCCTGAACTGCTCAAAGAACACCTCACATTGTTCAAGAAGCAGATGAGTGAAGATGACTTCAAGAGGTATGAAAGTGGACCGGATTATTTTAACACATATTTTTCATTTGAGAATTGCCCAAGTTTGGATAGGAATGTACTTAATGTTCTTTTAGTTTATGTTAAACACTACAATAGGAAGAAGAGAGCAATTATGGAAAGGCGAATTGAGAAACGGAGAGCATCATCATAA 2751 0.3831 MSALHIMTSSTSSSSSQIKYDVFISFRGLDTRHGFLSHLLKALREKQIDAYVDDKLKEGNELLPALLTAIEESQIALVIFSKDYASSKWCLEELVKITECMAKSWQIVVPIFYNVDPSDVRHQKGCYKSAFADHEKSFKDNIMNVQNWKLALKRVANLSGFHSTIFGTEAELIERVVQRVLTRLNYIPQIELKGLIGIDKPIAELQSLISCNAAKDVHIIGIWGMGGIGKTTIASALFNILCSEFEGCCFLPNVREQSEKNGITQLRDKLLSILLEEKDLSIGASGVPTHVLRRLGRKKILVVLDDVNNPDHVQDLVGGHEWFGRGSRIVVTTRDKHVICKEADDIYQVGVLEHHEALQLLNLHAFNGSSLELNQHNDLMTRVVDYAKGIPLALKVLGTFLYGKSDEEWESQLQKLQKMSFKEIQNVLRLSYEGLDREESNIFLYIACFFEGHDNIKILLDACGYSTAIALKTLHDRALIIVSKDGKHVTMHDLIREMGREIVRAQNIDKFGERSHLWDPTEITQVLKQDQGTNRIESITFNMSSAPHLSLSRHSLSKMRNLNFLRFYSHDTYRVNLPEGLENLPDKLKLFHWDDYPLQSLPTKFNAENLVEFDMQGSYVKKLWENVQNIANLRRIDLDGSKELVELPDLSKASNLETLSLSDCENLRSLHPSIFSLQKLIYVDLQGCIRLKKLPDKCSRSSKVEHLNLSGCKSLKHLPDSISKLEFLKELYLEGCQQLDTSNLHILFSGLSSLERLNLGACHNLDKLPDNVNNLSLLCWLSLKETNLKSLPESIKHLRKLRSLYLGSCRMLQSLPELPPFIQYLEVSDCIALETVFTPTPELLKEHLTLFKKQMSEDDFKRYESGPDYFNTYFSFENCPSLDRNVLNVLLVYVKHYNRKKRAIMERRIEKRRASS 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60799g00003 916 ProSiteProfiles TIR domain profile. 18 184 IPR000157 GO:0007165
Stsc60799g00003 916 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 719 IPR044974 GO:0006952
Stsc60799g00003 916 Pfam NB-ARC domain 213 432 IPR002182 GO:0043531
Stsc60799g00003 916 PRINTS Disease resistance protein signature 219 234 - -
Stsc60799g00003 916 PRINTS Disease resistance protein signature 651 667 - -
Stsc60799g00003 916 PRINTS Disease resistance protein signature 294 308 - -
Stsc60799g00003 916 PRINTS Disease resistance protein signature 387 401 - -
Stsc60799g00003 916 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 186 - -
Stsc60799g00003 916 Gene3D Ribonuclease Inhibitor 724 857 IPR032675 -
Stsc60799g00003 916 Pfam TIR domain 19 189 IPR000157 GO:0007165
Stsc60799g00003 916 Gene3D - 16 180 IPR035897 -
Stsc60799g00003 916 Gene3D Ribonuclease Inhibitor 504 723 IPR032675 -
Stsc60799g00003 916 Gene3D - 181 347 IPR027417 -
Stsc60799g00003 916 SMART till_3 19 158 IPR000157 GO:0007165
Stsc60799g00003 916 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 446 IPR027417 -
Stsc60799g00003 916 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 161 IPR035897 -
Stsc60799g00003 916 SUPERFAMILY L domain-like 491 834 - -
Stsc60799g00003 916 Gene3D - 351 436 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60799g00003 Stsc-Chr60799 30439 37410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60799g00003 15 804 WRKY Transcription Factor Family AT4G12020 33.857 2.48e-113 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60799g00003 - - ahf:112730190 1449.11