Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc60797g00001 | ATGTCTGCGGTTGCGGACGTTCCCACTGATACTACAGCTCCAAATCAAATTGACTCAAAGCCAAAAACAAAGGCAAAATCTGATGATGAGTTCAATGTGCAAAAGCTTGTTGACATTTTCACAAAGCTAAACCCTTTGGCCAAGGAGTTCTTCCCGTCATCTTATTCTTACCATGATCACCTTCATCAGGGTTATTATCAGTTCTCACCCAACAACTTTATGCCCAATAATAAGCCATTTGATGGTGATAGTAACCAAAGGAATCGAAGGAGGCGAGCTAGTTTTAATCAAGTGGGCAAAAGGTTGAATGGACGAGTGAAGGCTCAGCGAGAGGATAGCGTTAAAAGAACAGTATATGTTTCTGATATTGATCAGCATGTTACTGAGGAACGCCTTGCTGCCTTATTCAGCACTTGTGGGCAAGTAATTGACTGCAGAATTTGTGGTGATCCTCATTCAGTTCTTCGTTTTGCATTTGTTGAGTTCACAGATGAAGAAGGTGCAAGGGCAGGTTTAAGACTTGGTGGAACTGTGCTTGGATATTACCCCCTTAGGGTTCTTCCTTCAAAAACTGCTATCCTTCCCGTGAATCCTACATTTCTTCCTAGGTCAGCTGATGAAAGGAAAATGTGTACAAGAACTGTCTACTGTACAAATATTGACAAAAAGGTTTCTCAAACAGAAGTCAAGACTTTTTTTGAATCATCTTGTGGTGAGGTTACCCGGCTAAGGTTGTTAGGAGATCGTGTGCATTCAACTCGAATTGCTTTTGTTGAATTTGCAATGGCTGAAAGTGCTATCATAGCATTAAATTGTAGCGGGATGCTCTTAGGAAACCAGCCAGTCAG | 848 | 0.4151 | MSAVADVPTDTTAPNQIDSKPKTKAKSDDEFNVQKLVDIFTKLNPLAKEFFPSSYSYHDHLHQGYYQFSPNNFMPNNKPFDGDSNQRNRRRRASFNQVGKRLNGRVKAQREDSVKRTVYVSDIDQHVTEERLAALFSTCGQVIDCRICGDPHSVLRFAFVEFTDEEGARAGLRLGGTVLGYYPLRVLPSKTAILPVNPTFLPRSADERKMCTRTVYCTNIDKKVSQTEVKTFFESSCGEVTRLRLLGDRVHSTRIAFVEFAMAESAIIALNCSGMLLGNQPV | 282 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc60797g00001 | 282 | CDD | RRM2_CID8_like | 210 | 282 | IPR034825 | - | |
| Stsc60797g00001 | 282 | SMART | rrm1_1 | 214 | 281 | IPR000504 | GO:0003723 | |
| Stsc60797g00001 | 282 | SMART | rrm1_1 | 117 | 187 | IPR000504 | GO:0003723 | |
| Stsc60797g00001 | 282 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Stsc60797g00001 | 282 | Gene3D | - | 206 | 282 | IPR012677 | - | |
| Stsc60797g00001 | 282 | Gene3D | - | 74 | 192 | IPR012677 | - | |
| Stsc60797g00001 | 282 | MobiDBLite | consensus disorder prediction | 72 | 92 | - | - | |
| Stsc60797g00001 | 282 | FunFam | Polyadenylate-binding protein-interacting protein 10 | 207 | 282 | - | - | |
| Stsc60797g00001 | 282 | FunFam | Polyadenylate-binding protein-interacting protein 11 | 82 | 193 | - | - | |
| Stsc60797g00001 | 282 | Pfam | Ataxin-2 C-terminal region | 39 | 54 | IPR009818 | - | |
| Stsc60797g00001 | 282 | CDD | RRM1_CID8_like | 114 | 193 | IPR034823 | - | |
| Stsc60797g00001 | 282 | SUPERFAMILY | RNA-binding domain, RBD | 80 | 189 | IPR035979 | GO:0003676 | |
| Stsc60797g00001 | 282 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Stsc60797g00001 | 282 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR | 40 | 281 | - | - | |
| Stsc60797g00001 | 282 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 215 | 281 | IPR000504 | GO:0003723 | |
| Stsc60797g00001 | 282 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 118 | 180 | IPR000504 | GO:0003723 | |
| Stsc60797g00001 | 282 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 213 | 282 | IPR000504 | GO:0003723 | |
| Stsc60797g00001 | 282 | SUPERFAMILY | RNA-binding domain, RBD | 203 | 281 | IPR035979 | GO:0003676 | |
| Stsc60797g00001 | 282 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 116 | 191 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc60797g00001 | Stsc-Chr60797 | 401 | 6192 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc60797g00001 | 117 | 282 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 28.402 | 7.63e-10 | 57.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc60797g00001 | - | - | qsa:O6P43_001153 | 421.009 |